Table 3.

Differences in Kmers, genes, and SNPs between resistant (R) and susceptible (S) isolates.

Drug	#Resistant isolates (R)	#Susceptible isolates (S)	#Associated Kmers (R)	#Associated Kmers (S)	#Associated genes (R)	#Associated genes (S)	#Associated SNPs
ATM	57	7	0	0	0	0	0
AZM	50	6	0	0	0	0	0
CIP	73	11	0	0	0	0	0
ERY	81	0	N/A	N/A	N/A	N/A	N/A
GEN	57	16	0	0	0	0	10
LVX	71	12	0	0	0	0	2
FEP	61	13	0	0	0	0	0
PIP	70	5	0	3	0	0	0
CRO	67	3	3*	47	1*	0	0
CAZ	68	9	0	0	0	0	0
CXM	67	11	0	0	0	0	0

^*Present in n-1 genomes.