Table 2.
Details of the relevant information provided in the StoneMod database.
| Type of the information | Items displayed | Description (with example) | Resource of the information |
|---|---|---|---|
| Protein information | Common name |
Full name recommended by the UniProt consortium (e.g. Uromodulin) |
UniProtKB13 (https://www.uniprot.org/) |
| Alternative name |
Synonym of the recommended full name (e.g. Tamm-Horsfall urinary glycoprotein) |
UniProtKB13 (https://www.uniprot.org/) | |
| UniProt ID |
The UniProtKB accession number of a protein that consists of 6 or 10 alphanumerical characters with a hyperlink to the UniProtKB website (e.g. P07911) |
UniProtKB13 (https://www.uniprot.org/) | |
| Isoform |
A hyperlink to the protein isoform (if any) in the UniProtKB website (e.g. P07911) |
UniProtKB13 (https://www.uniprot.org/) | |
| Protein Atlas |
The Protein Atlas identifier with a hyperlink to the Human Protein Atlas website (e.g. P07911) |
Human Protein Atlas14 (https://www.proteinatlas.org/) | |
| PeptideAtlas |
The PeptideAtlas identifier with a hyperlink to the PeptideAtlas website (e.g. P07911) |
PeptideAtlas15 (https://www.peptideatlas.org/) | |
| Gene information | Gene name |
The official full name of the gene (e.g. uromodulin) |
NCBI Gene16 (https://www.ncbi.nlm.nih.gov/gene) |
| Gene symbol |
The official symbol of the gene with a hyperlink to the NCBI Gene website (e.g. UMOD) |
NCBI Gene16 (https://www.ncbi.nlm.nih.gov/gene) | |
| Ensembl |
The Ensembl gene identifier in the Genome annotation database (e.g. ENSG00000169344) |
Ensembl18 (https://www.ensembl.org/) | |
| Modulatory effects | Crystallization | Modulatory effects on crystallization with references and hyperlinks to PubMed | PubMed searching with manual curation |
| Crystal growth | Modulatory effects on crystal growth with references and hyperlinks to PubMed | PubMed searching with manual curation | |
| Crystal aggregation | Modulatory effects on crystal aggregation with references and hyperlinks to PubMed | PubMed searching with manual curation | |
| Crystal adhesion | Modulatory effects on crystal adhesion with references and hyperlinks to PubMed | PubMed searching with manual curation |