Table 1. Genetic diversity of hCoV-19/Turkey/ERAGEM-001/2020 compared to the MN908947.3 reference genome of the SARS-CoV-2 Wuhan-Hu-1 isolate.
Pos | Gene | Ref | Alt | AA Pos | Ref AA | Alt AA | Depth | VF (%) |
---|---|---|---|---|---|---|---|---|
1397 | ORF1ab | G | A | 378 | Val | Ile | 45501 | 99.6 |
11083 | ORF1ab | G | T | 3606 | Leu | Leu | 17037 | 72.3 |
23876 | S | G | A | 772 | Val | Ile | 21239 | 99.9 |
28688 | NP | T | C | 139 | Leu | Leu | 35885 | 99.7 |
29563 | ORF10 | C | T | 2 | Gly | Gly | 55600 | 99.4 |
29742 | 3'UTR | G | T | - | - | - | 78352 | 99.7 |
Pos = Position, Ref = Reference, Alt = Alternative, AA = Amino Acids, VF (%) = Variant Fraction.