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. 2020 Sep 16;15(9):e0238614. doi: 10.1371/journal.pone.0238614

Table 1. Genetic diversity of hCoV-19/Turkey/ERAGEM-001/2020 compared to the MN908947.3 reference genome of the SARS-CoV-2 Wuhan-Hu-1 isolate.

Pos Gene Ref Alt AA Pos Ref AA Alt AA Depth VF (%)
1397 ORF1ab G A 378 Val Ile 45501 99.6
11083 ORF1ab G T 3606 Leu Leu 17037 72.3
23876 S G A 772 Val Ile 21239 99.9
28688 NP T C 139 Leu Leu 35885 99.7
29563 ORF10 C T 2 Gly Gly 55600 99.4
29742 3'UTR G T - - - 78352 99.7

Pos = Position, Ref = Reference, Alt = Alternative, AA = Amino Acids, VF (%) = Variant Fraction.