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. Author manuscript; available in PMC: 2021 Oct 1.
Published in final edited form as: DNA Repair (Amst). 2020 Jun 29;94:102903. doi: 10.1016/j.dnarep.2020.102903

Table 1.

SRAP protein crystal structures

Protein DNAa PDBID Reference
H. sapiens HMCES SRAP domain None 5KO9 (48)
H. sapiens HMCES SRAP domain Non-covalent overhang 5′-CCAGACGTTG-3′ 3′-GGTCTG-5′ 6OEA (48)
H. sapiens HMCES SRAP domain Non-covalent overhang 5′-CCAGACGTT-3′ 3′-GGTCTG-5′ 6OEB (48)
H. sapiens HMCES SRAP domain Covalent overhang 5′-CCAGACGT(AP)-3′ 3′-GGTCTG-5′ 6OE7 (48)
H. sapiens HMCES SRAP domain Non-covalent palindromic 5′-CAACGTTGTTTT-3′ 3′-TTTTGTTGCAAC-5′ 6OOV (49)
E. coli YedK Covalent ssDNA 5′-GTC(AP)GGA-3′ 6NUA (32)
E. coli YedK Non-covalent ssDNA 5′-GTC(C3)GGA-3′ 6NUH (32)
E. coli YedK Covalent ssDNA 5′-AAA(AP)AA-3′ 6KCQ (47)
E. coli YedK Covalent ssDNA 5′-TTC(AP)-3′ 6KIJ (47)
E. coliYedK Covalent ssDNA 5′-CGGT(AP)-3′ 6KBX (47)
E. coli YedK Non-covalent ssDNA 5′-GGT(THF)GATTC-3′ 6KBZ (47)
E. coliYedK Non-covalent ssDNA 5′-GGTCGATTC-3′ 6KBS (47)
E. coli YedK None 6KBU (47)
E coli YedK None 2ICU SECSG, RSGIb
Bordetella bronchiseptica Q7WLM8 None 1ZN6 NESGc
Bordetella bronchiseptica BB2244 None 2BDV NESGc
Agrobacterium tumefaciens Atu5096 None 2AEG NESGc
Bacteroides thetaiotaomicron BT1218 None 2F20 NESGc
a

AP, abasic site; C3, C3-spacer, THF, tetrahydrofuran

b

SECSG, Southeast Collaboratory for Structural Genomics; RSGI RIKEN Structural Genomics/Proteomics Initiative

c

NESG, Northeast Structural Genomics Consortium