Table 1.
Protein | DNAa | PDBID | Reference |
---|---|---|---|
H. sapiens HMCES SRAP domain | None | 5KO9 | (48) |
H. sapiens HMCES SRAP domain | Non-covalent overhang 5′-CCAGACGTTG-3′ 3′-GGTCTG-5′ | 6OEA | (48) |
H. sapiens HMCES SRAP domain | Non-covalent overhang 5′-CCAGACGTT-3′ 3′-GGTCTG-5′ | 6OEB | (48) |
H. sapiens HMCES SRAP domain | Covalent overhang 5′-CCAGACGT(AP)-3′ 3′-GGTCTG-5′ | 6OE7 | (48) |
H. sapiens HMCES SRAP domain | Non-covalent palindromic 5′-CAACGTTGTTTT-3′ 3′-TTTTGTTGCAAC-5′ | 6OOV | (49) |
E. coli YedK | Covalent ssDNA 5′-GTC(AP)GGA-3′ | 6NUA | (32) |
E. coli YedK | Non-covalent ssDNA 5′-GTC(C3)GGA-3′ | 6NUH | (32) |
E. coli YedK | Covalent ssDNA 5′-AAA(AP)AA-3′ | 6KCQ | (47) |
E. coli YedK | Covalent ssDNA 5′-TTC(AP)-3′ | 6KIJ | (47) |
E. coliYedK | Covalent ssDNA 5′-CGGT(AP)-3′ | 6KBX | (47) |
E. coli YedK | Non-covalent ssDNA 5′-GGT(THF)GATTC-3′ | 6KBZ | (47) |
E. coliYedK | Non-covalent ssDNA 5′-GGTCGATTC-3′ | 6KBS | (47) |
E. coli YedK | None | 6KBU | (47) |
E coli YedK | None | 2ICU | SECSG, RSGIb |
Bordetella bronchiseptica Q7WLM8 | None | 1ZN6 | NESGc |
Bordetella bronchiseptica BB2244 | None | 2BDV | NESGc |
Agrobacterium tumefaciens Atu5096 | None | 2AEG | NESGc |
Bacteroides thetaiotaomicron BT1218 | None | 2F20 | NESGc |
AP, abasic site; C3, C3-spacer, THF, tetrahydrofuran
SECSG, Southeast Collaboratory for Structural Genomics; RSGI RIKEN Structural Genomics/Proteomics Initiative
NESG, Northeast Structural Genomics Consortium