Table 1.
Metagenome information and results of DMSP-related gene searches in the metagenome data.
| Samples | Depth (m) | Estimated % of cell with | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DMSP biosynthesis | DMSP cleavage | DMSP demethylation | ||||||||||||
| DsyB | MmtN | DSYB | TpMMT | DddP | DddQ | DddL | DddD | DddK | DddW | DddY | Alma1 | DmdA | ||
| FL0a | 0 | 0.78 ± 0.16 | 0.40 ± 0.18 | 0 | 0 | 6.48 ± 0.24 | 0.96 ± 0.14 | 0.64 ± 0.06 | 0.35 ± 0.16 | 0.26 ± 0.07 | 0.00 | 0.01c | 0 | 35.73 ± 7.96 |
| PA0a | 0 | 0.89 ± 0.17 | 0.23 ± 0.01 | 0 | 0 | 6.05 ± 1.43 | 0.24 ± 0.17 | 1.29 ± 0.56 | 0.33 ± 0.05 | 0.29c | 0.09c | 0.00 | 0 | 12.73 ± 0.89 |
| FL2000b | 2000 | 0.43 ± 0.15 | 0.47 ± 0.16 | 0 | 0 | 5.34 ± 0.20 | 3.55 ± 0.63 | 1.09 ± 0.14 | 0.10 ± 0.06 | 0.00 | 0.00 | 0.13 ± 0.06 | 0 | 26.66 ± 7.17 |
| FL4000a | 4000 | 3.28 ± 1.88 | 0.33 ± 0.12 | 0 | 0 | 2.74 ± 0.87 | 1.79 ± 0.64 | 3.03 ± 0.41 | 0.24 ± 0.04 | 0.00 | 0.35c | 0.12c | 0 | 6.01 ± 0.99 |
| PA4000a | 4000 | 2.18 ± 0.02 | 0.65 ± 0.55 | 0 | 0 | 5.29 ± 1.85 | 0.35 ± 0.14 | 4.61 ± 1.91 | 0.34 ± 0.17 | 0.00 | 0.15 ± 0.05 | 0.03c | 0 | 5.43 ± 3.16 |
| FL8000b | 8000 | 4.03 ± 1.92 | 1.22 ± 0.24 | 0 | 0 | 6.00 ± 0.61 | 0.71 ± 0.11 | 4.00 ± 1.19 | 1.61 ± 0.12 | 0.03c | 0.00 | 0.06c | 0 | 10.37 ± 0.88 |
| FL9600 | 9600 | 2.23 | 0.36 | 0 | 0 | 1.03 | 0 | 1.40 | 0.19 | 0.00 | 0.00 | 0.00 | 0 | 1.65 |
| FL10400 | 10,400 | 2.63 | 0.28 | 0 | 0 | 0.00 | 0 | 0.00 | 0.14 | 0.00 | 0.00 | 0.00 | 0 | 0.00 |
| PA10400 | 10,400 | 2.26 | 0.00 | 0 | 0 | 0.24 | 0 | 0.64 | 0.30 | 0.00 | 0.00 | 0.00 | 0 | 0.00 |
| FL10500 | 10,500 | 3.53 | 0.57 | 0 | 0 | 0.35 | 0.07 | 0.51 | 0.14 | 0.00 | 0.13 | 0.00 | 0 | 0.70 |
| PA10500 | 10,500 | 3.58 | 0.28 | 0 | 0 | 0.12 | 0 | 0.42 | 0.34 | 0.00 | 0.12 | 0.00 | 0 | 0.42 |
FL free-living, PA particle-associated. Bacterial sequences were normalized to gene length. Estimated percentages were calculated using recA abundance. Data shown are means ± SD.
aMean of two replicates, which are from different cruises but the same station (September 2016 and March 2017).
bMean of two replicates, which are from the same cruise (March 2017).
cValues from one cruise when another value is zero.