Table 2.
Overview of comparative genomics analysis.
| Cluster | # of phages | Phage names | # of LCBs | # core genes | Core genome | # accessory genes | Accessory genome | Pan genome genes | |
|---|---|---|---|---|---|---|---|---|---|
| A1a | 17 | Phage 77, 53, 75, 63, 54, 72, 64, 71, 47, 48, 59, 68, 65, 8, Henu8, G29-2, and pSf-1 | 16 | 28 | 22% | 98 | 78% | 126 | |
| A2a | 7 | Phage 80, 28, 56_1,76, Swan01, SECphi27 and EcoS_95 | 7 | 46 | 40% | 69 | 60% | 115 | |
| A3a | 4 | Phages 69, 52, 56_2, and Jahat_MG145 | 4 | 62 | 73% | 23 | 27% | 85 | |
| B | 6 | Phage 73, 70, 17, 58, 74, and CEB_EC3a | 6 | 27 | 33% | 54 | 67 | 81 | |
| C | 10 | Phage 61, T5, EASG3, HASG4, AKFV33, OSYSP, phiLLS, SP15, FFH1, and HdH2 | 6–10 | 86 | 37% | 147 | 63% | 233 | |
| D | 19 | Phage 60, 78, 62, 66, 79, EC6, VpaE1, XTG1, KhF1, KhF2, KhF3, HY02, Ro111lw, O157_1, O157_12, WV8, O157_11, Alf5, and AYO145A | 14–17 | 72 | 39% | 115 | 61% | 187 | |
| E | 18 | Phage 30, 15, 18, HX01, KAW3E185, WFbE185, G53, APCEc01, MM02, HP3, ATK47, ATK48, O157_3, O157_6, ST0, JS09, G2285, and G2469 | 16–17 | 184 | 58% | 133 | 42% | 317 | |
| F | 13 | Phage 55, 11, 10, G2540-3, G29, G4500, D5505, G9062, CF2, YUEEL01, fFiEco06, ACG_C40, and OE5505 | 5 | 197 | 59% | 136 | 41% | 333 | |
aSubcluster instead of cluster. Local collinear blocks (LCB) = indicating homologous DNA regions shared by two or more genomes without sequence rearrangements.