Table 6:

Docking accuracy of multiple protein-ligand docking programs on the SB2012 set.

	CDOCKERc	Autodock v4.2.6	Autodock Vinad	Autodock Vinae	DOCK v6.7
accuracy(nativea)	0.569 (± 0.006f)	0.477 (± 0.009)	0.631 (±0.004)	0.642 (± 0.005)	0.553 (±0.005)
accuracy (randomb)	0.429 (± 0.007)	0.418 (±0.004)	0.532 (±0.004)	0.547 (±0.004)

^aLigand native conformations are used as starting conformations.

^bLigand random conformations are used as starting conformations.

^c500 trials are used in CDOCKER.

^dexhaustiveness = 8.

^eexhaustiveness = 20.

^fAll uncertainties are estimated using 10 independent repeats.