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. 2020 Sep 17;21(Suppl 13):388. doi: 10.1186/s12859-020-03685-1

Table 1.

Runtimes and speedup for different scoring schemes on the IBM machine

(2,-1,-2,-2) (1,-3,-1,-1) (5,-4,-10,-1)
CPU 31m15 21m28s 31m27s
GPU-coalesced 76.0 59.3 78.0
speedup 24.7 21.7 24.2