Table 1.
Selected upregulated and downregulated genes during long‐term cultivation of petunia
| Description | Fold change | P‐value | Category |
|---|---|---|---|
| Upregulated | |||
| 1‐Aminocyclopropane‐1‐carboxylate oxidase 1 | 32.045 | 2.18E‐04 | Senescence |
| Ethylene‐responsive transcription factor 1B | 7.271 | 3.40E‐03 | Senescence |
| DCD (Development and Cell Death) domain protein | 4.119 | 8.45E‐03 | Senescence |
| Senescence‐associated gene 101 | 2.623 | 2.60E‐02 | Senescence |
| Pathogenesis‐related thaumatin superfamily protein | 25.009 | 5.63E‐04 | Disease resistance |
| G‐type lectin S‐receptor‐like serine/threonine‐protein kinase | 9.346 | 8.83E‐03 | Disease resistance |
| Disease resistance protein (TIR‐NBS‐LRR class) family | 8.406 | 7.48E‐03 | Disease resistance |
| Copper chaperone for superoxide dismutase | 3.159 | 7.66E‐03 | Stress (oxidation) |
| Glutathione S‐transferase TAU 19 | 15.714 | 3.33E‐02 | Stress (oxidation) |
| Wound‐induced protein | 6.121 | 1.00E‐02 | Stress (wounding) |
| Temperature‐induced lipocalin | 5.685 | 1.71E‐02 | Stress (heat) |
| Heat shock transcription factor A2 | 4.647 | 2.23E‐02 | Stress (heat) |
| Protein DEHYDRATION‐INDUCED 19 homolog 4 | 3.546 | 3.89E‐04 | Stress (dehydration) |
| Dicer‐like 2 | 3.842 | 1.22E‐01 | RNA silencing |
| Argonaut family protein (AGO2) | 7.339 | 2.30E‐03 | RNA silencing |
| Downregulated | |||
| Histone H2B.10 | −8.822 | 1.45E‐03 | Histone |
| Histone H2A 12 | −3.508 | 4.31E‐02 | Histone |
| Lysine‐specific histone demethylase 1 homolog 1 | −3.564 | 3.97E‐03 | Histone |
| DNA (cytosine‐5)‐methyltransferase 1 | −2.198 | 2.51E‐02 | DNA methylation |
| DNA repair and recombination protein RadA | −4.281 | 2.93E‐02 | Stability of DNA |
| Argonaut family protein (AGO10) | −3.664 | 6.05E‐03 | RNA silencing |
| Double‐stranded RNA‐binding protein 4 | −2.517 | 8.02E‐02 | RNA silencing |
| DNA‐directed RNA polymerase IV subunit 1 | −2.399 | 1.70E‐02 | RNA silencing |
RNA‐seq analysis was carried out using total RNAs prepared from the leaves of 2‐ and 4‐month‐old plants. Upregulated and downregulated genes in 4‐month‐old plants are listed.