Table 3. Selection pressure analysis of four Hd1 types in several countries.
Haplotype | Country | Subspecies | No. of accessions | π | θw | Tajima's D | Significance of D |
---|---|---|---|---|---|---|---|
Type 7 | Bangladesh | Indica | 4 | 0.00065 | 0.00066 | -0.15923 | P >0.10 |
Type 7 | Indonesia | Indica and japonica | 16 | 0.00138 | 0.0027 | -2.12711** | P <0.01 |
Type 7 | Laos | Indica | 4 | 0.00044 | 0.00044 | -0.15777 | P >0.10 |
Type 12 | Laos | Japonica | 10 | 0.00115 | 0.00179 | -1.75625* | P <0.05 |
Type 13 | Bangladesh | Indica | 35 | 0.00294 | 0.00603 | -1.95450* | P <0.05 |
Type 13 | India | Indica | 16 | 0.00320 | 0.00267 | 0.86860 | P >0.10 |
Type 13 | Indonesia | Indica and japonica | 99 | 0.00120 | 0.00547 | -2.65204** | P <0.001 |
Type 13 | Indonesia | Japonica | 61 | 0.00137 | 0.00534 | -2.65105** | P <0.001 |
Type 13 | Philippines | Indica and japonica | 62 | 0.00125 | 0.00432 | -2.52823** | P <0.001 |
Type 13 | Philippines | Japonica | 46 | 0.00137 | 0.00432 | -2.50592** | P <0.001 |
Type 19 | Taiwan | Japonica | 11 | 0.00205 | 0.00328 | -1.81600* | P<0.05 |
Hd1 gene region and nearby ± 10 kb of traditional landraces were used for calculation.