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. 2020 Aug 19;48(16):9320–9335. doi: 10.1093/nar/gkaa677

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© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 2. — hnRNPK binds transcripts at locations with patches of cytosines in cells. (A) The top RNA motif generated from RNA sequences bound to hnRNPK in HepG2 cells (above) and K562 cells (below). (B) eCLIP read coverage and cytosine patch sliding window analysis of human XIST from K562 cells; windows are 75 nt in length; eCLIP reads are from ENCODE experiment ENCFF894NKS; eCLIP read coverage and the number of cytosine patches found are plotted separately (top and middle); z-scores are calculated for each and overlaid on the same graph for easy visualization (bottom).