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. Author manuscript; available in PMC: 2021 Apr 7.
Published in final edited form as: Biochemistry. 2020 Mar 18;59(13):1328–1337. doi: 10.1021/acs.biochem.0c00097

Table 2.

Individual Rate Constants and Errorsa

Lower limitb Upper Limitb % rangec Best fit
f/f0d 0.23 0.349 21% 0.29
Kde (μM) 140 200 18% 165
k3 (s−1) 97.2 140 18% 116
k4 (s−1) 11.5 14.2 11% 12.8
a

The data are fit globally to the mechanism shown in Scheme 4.

b

The upper and lower limits reflect a threshold of a 10% deviation from the minimal SSE in the confidence contours. FitSpace error confidence contours are shown in Figure 8 (19).

c

The percentage range was calculated by dividing the mean of the range by the best fit value as (upper − lower)/(2 × best fit). This reflects the allowable variation of each best fit value as a percentage.

d

The fluorescence scaling factor is shown as the fractional change in enzyme fluorescence (see the text).

e

The value for k1 (α-ketoglutarate binding) was assumed to be fast and held fixed at a lower limit of 5.5 × 106 M−1 s−1, so fitting to derive k2 defined only Kd.