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. 2020 Aug 28;117(37):22841–22848. doi: 10.1073/pnas.2010317117

Table 2.

Simulation and experimental analysis of Gibbs energy activation of TS formation of WTIgP and its variants in reaction with POX from substrate complex to TS

ΔG,* kcal/mol ΔG, kcal/mol ΔG,§ kcal/mol
l-Ser35Arg 21.2 ± 0.3 21.5 21.3
l-Ser35Lys 21.1 ± 0.4 25.7 23.8
l-Leu47Arg 20.9 ± 0.8 30.0 25.3
l-Leu47Lys 21.4 ± 0.7 24.6 21.3
WTIgP ND 28.5 29.3
*

ΔG, Gibbs energy of activation calculated using Eyring–Polanyi equation.

ΔG, Gibbs free energy for TS formation calculated by combined QM/MM and funnel metadynamics using the following constraints: dTyrO–P = 1.5 to 4 Å; angle Tyr–P–O4-NP = 145 to 180°.

§

ΔG, Gibbs free energy for TS formation calculated by combined QM/MM and funnel metadynamics using the following constrains: dTyrCβ–P = 6 to 9 Å; angle Tyr–P–O4-NP = 120 to 180°.

ND, not determined because of low rate of reaction.