Table 4.
Characteristics of each cluster of the hierarchical 12-cluster analysis. For each cluster, variables of cultured cells (expression of several proteins (ICC) or mRNA (PCR)), as well as the content of the human sera, in growth factors and signaling molecules are shown.
s-PRGF1 | s-PRGF2 | HS1 | HS2 | |
---|---|---|---|---|
Cornea 1 | Cluster 1 | Cluster 5 | Cluster 8 | Cluster 11 |
Variables of cultured cells | − ICC ΔNp63α | +++ ICC ΔNp63α | +++ PCR Ki67 | − PCR K14 |
−−− PCR ABCG2 | ++ Size 3 | + PCR N-Cadherin, ΔNp63α | −− PCR ABCG2, K12 | |
−− PCR N-Cadherin, Size 2 | −−− PCR K12 | |||
−−− PCR Ki67 | ||||
Content of the sera in GFs | +++ PDGF | +++ TGF | +++ GDNF, SP | +++ HGF, FGFb |
++ VEGF | ++ IGF-1 | ++ NGF | ++ KGF, EGF | |
− SP | −− FN, VEGF | −−− TNF | −− NGF | |
−− EGF, GDNF | ||||
−−− IGF-1 | ||||
Cornea 2 | Cluster 2 | Cluster 6 | Cluster 9 | Cluster 12 |
Variables of cultured cells | + PCR K12 | +++ Size 1 | +++ PCR Ki67 | +++ PCR K14, Size 3 |
−−− PCR N-Cadherin | ++ PCR K14, ABCG2 | ++ PCR K14, ABCG2 | ++ PCR ABCG2 | |
+ PCR K12 | − Size1 | + PCR K12 | ||
−− PCR Ki67 | −−−Size 2 | |||
Content of the sera in GFs | ++ PDGF | ++ TGF-β, IGF-1 | +++ GDNF, SP | +++ HGF, FGFb |
− EGF, GDNF | −− FN, VEGF | ++ NGF | ++ KGF, EGF | |
−− IGF-1 | −−− TNF | −− NGF | ||
Cornea 3 | Cluster 3 | Cluster 7 | Cluster 10 | Cluster 10 |
Variables of cultured cells | +++ PCR K12 | +++ PCR N-Cadherin | − PCR K12 | − PCR K12 |
++ ICC ΔNp63α, Size 2 | −−− PCR ΔNp63α | −−− PCR K14, ΔNp63α | −−− PCR K14, ΔNp63α | |
− Size 3 | ||||
Content of the sera in GFs | ++ PDGF | ++ TGF-β, IGF-1 | + FGFb | + FGFb |
− IGF-1 | −− FN, VEGF |
Positive (+) and negative (−) statistically significant differences between cluster mean and global mean: + (p < 0.05), ++ (p < 0.01) and +++ (p < 0.001); − (p < 0.05), −− (p < 0.01) and −−− (p < 0.001). Cluster 4 has been excluded from the table because it only contains two samples corresponding to two different treatments. GF: growth factors; Size 1: cell size < 12 µm; Size 2: 12–20 µm; Size 3: cell size > 20 µm.