| AD | Alzheimer’s disease |
| DFT | density functional theory |
| EVB | empirical valence bond |
| FAD | flavin adenin dinucleotide |
| FEP | free energy perturbation |
| LRF | local reaction field |
| MAO | monoamine oxidase |
| MM-GBSA | molecular mechanics-generalized Born and surface area |
| PD | Parkinson’s disease |
| QM | quantum mechanics |
| QM/MM | quantum mechanics/molecular mechanics |
| RAS | rasagiline |
| SEL | selegiline |
| US | umbrella sampling |