REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit polyclonal anti-Akt | Cell Signaling Technology | Cat# 9272, RRID:AB_329827 |
Mouse monoclonal anti-Akt p-S473 | Cell Signaling Technology | Cat# 12694, RRID:AB_2797994 |
Rabbit polyclonal anti-ATG13 | Sigma-Aldrich | Cat# SAB4200100, RRID:AB_10602787 |
Sheep polyclonal anti-ATG13 | MRC PPU Reagents & Services | Cat# S777C |
Rabbit polyclonal anti-ATG13 p-S318 | Novus | Cat# NBP2-19127 |
Rabbit monoclonal anti-BRAF | Thermo Fisher Scientific | Cat# 702187, RRID:AB_2633065 |
Rabbit polyclonal anti-CK1α | Bethyl | Cat# A301-991A RRID:AB_1576501 |
Sheep polyclonal anti-CK1α | MRC PPU Reagents & Services | Cat# SA527 |
Rabbit polyclonal anti-CUL2 | Invitrogen | Cat# 51-1800, RRID:AB_2533898 |
Rabbit polyclonal anti-EGFR | Santa Cruz Biotechnology | Cat# sc-03, RRID:AB_631420 |
Rabbit monoclonal anti-EGFR p-Y1068 | Cell Signaling Technology | Cat# 3777, RRID:AB_2096270 |
Rabbit polyclonal anti- ERK1/2 | Cell Signaling Technology | Cat# 9102, RRID:AB_330744 |
Mouse monoclonal anti-ERK1/2 p-T202/Y204 | Cell Signaling Technology | Cat# 9106, RRID:AB_331768 |
Sheep polyclonal anti-FAM83D | MRC PPU Reagents & Services | Cat# SA102 |
Rabbit polyclonal anti-FIP200 | Proteintech | Cat# 17250-1-AP, RRID:AB_10666428 |
Mouse monoclonal HRP-conjugated anti-FLAG | Sigma-Aldrich | Cat# A8592, RRID:AB_439702 |
Mouse monoclonal anti-FLAG | Sigma-Aldrich | Cat# F1804, RRID:AB_262044 |
Rabbit monoclonal anti-GAPDH | Cell Signaling Technology | Cat# 2118, RRID:AB_561053 |
Sheep polyclonal anti-GFP | MRC PPU Reagents & Services | Cat# S268B |
Rabbit polyclonal anti-HaloTag | Promega | Cat# G9281, RRID:AB_713650 |
Mouse monoclonal anti-HIF1α | BD Biosciences | Cat# 610959, RRID:AB_398272 |
Sheep polyclonal anti-LC3 | MRC PPU Reagents & Services | Cat# S400D |
Rabbit monoclonal pan-RAS | Abcam | Cat# ab206969 |
Sheep polyclonal anti-SGK3 | MRC PPU Reagents & Services | Cat# S848D |
Rat monoclonal anti-α-tubulin | Thermo Fisher Scientific | Cat# MA1-80189, RRID:AB_2210200 |
Mouse monoclonal anti-mono- and poly-ubiquitinylated Conjugates |
Enzo Life Sciences | Cat# BML-PW8810, RRID:AB_10541840 |
Rabbit monoclonal anti-ULK1 | Cell Signaling Technology | Cat# 8054, RRID:AB_11178668 |
Rabbit polyclonal anti-ULK1 p-S757 | Cell Signaling Technology | Cat# 6888, RRID:AB_10829226 |
Goat anti-rabbit IgG HRP-conjugated | Cell Signaling Technology | Cat# 7074, RRID:AB_2099233 |
Rabbit anti-sheep IgG HRP-conjugated | Thermo Fisher Scientific | Cat# 31480, RRID:AB_228457 |
Goat anti-rat IgG HRP-conjugated | Thermo Fisher Scientific | Cat# 62-9520, RRID:AB_2533965 |
Goat anti-mouse IgG HRP-conjugated | Thermo Fisher Scientific | Cat# 31430, RRID:AB_228307 |
Goat-anti-mouse IgG Alexa-Fluor 647 | Thermo Fisher Scientific | Cat# A-21235 |
Chemicals, Peptides, and Recombinant Proteins | ||
HaloPROTAC-E | Tovell et al. 2019a | N/A |
SGK3-PROTAC1 | Tovell et al. 2019b | N/A |
VH298 | Frost et al. 2016 | N/A |
MLN4924 | Active Biochem | Cat# A-1139 |
MG132 | Abcam | Cat# Ab141003 |
Bafilomycin-A1 | Enzo Life Sciences | Cat# BML-CM110 |
MRT68921 | MRC PPU Reagents & Services | N/A |
SBI-0206965 | Sigma-Aldrich | Cat# SML1540 |
S-trityl-L-cysteine (STLC) | Sigma-Aldrich | Cat# 164739 |
PEI MAX – Transfection Grade Linear PEI Hydrochloride MW 40,000 | Polysciences | Cat# 24765 |
Polybrene (Hexadimethrine bromide) | Sigma-Aldrich | Cat# 107689 |
GFP-Trap-Agarose | Chromotek | Cat# GTA-20 |
Anti-FLAG M2 Affinity Gel | Sigma-Aldrich | Cat# A2220 |
Immobilon Western Chemiluminescent HRP Substrate | Merck | Cat# WBKLS0500 |
ProLong™ Gold Antifade Mountant with DAPI | Life Technologies | Cat# P36935 |
Deposited Data | ||
Data obtained in this study | This paper | https://data.mendeley.com/datasets/xjnf2sr577/draft?a=4dd608f3-a50c-42af-bd0f-2d470e6b0ef0 |
Experimental Models: Cell Lines | ||
A549 | ATCC | Cat# CCL-185 |
ARPE-19 | ATCC | Cat# CRL-2302 |
ARPE-19 ULK1GFP/GFP | This paper | N/A |
HEK293 | ATCC | Cat# CRL-1573 |
HEK293 SGK3Halo/- | Tovell et al. 2019a | N/A |
HEK293 SGK3GFP/GFP | Malik et al. 2018 | N/A |
HEK293-FT | Invitrogen | Cat# R70007 |
U2OS | ATCC | Cat# HTB-96 |
U2OS FAM83DGFP/GFP | Fulcher et al. 2019 | N/A |
U2OS FAM83DGFP/GFPCSNK1A1mCh/mCh | Fulcher et al. 2019 | N/A |
Recombinant DNA | ||
pCMV-gag-pol | Cell Biolabs | Cat# RV-111 |
pCMV-VSV-G | Cell Biolabs | Cat# RV-110 |
pBabeD-puromycin FLAG-Halo-aGFP6M | This paper; MRC PPU Reagents & Services | Cat# DU57764 |
pBabeD-puromycin FLAG-aGFP6M-Halo | This paper; MRC PPU Reagents & Services | Cat# DU57765 |
pBabeD-puromycin FLAG-aGFP6M-HaloD106A | This paper; MRC PPU Reagents & Services | Cat# DU60748 |
pBabeD-puromycin FLAG-aHRAS | MRC PPU Reagents & Services | Cat# DU57190 |
pBabeD-puromycin FLAG-Halo-aHRAS | This paper; MRC PPU Reagents & Services | Cat# DU57462 |
pBabeD-puromycin GFP | MRC PPU Reagents & Services | Cat# DU32961 |
pBabeD-puromycin U6 ULK1 N-terminal knockin (KI) Sense guide RNA (gRNA) | This paper; MRC PPU Reagents & Services | Cat# DU57396 |
pX335 ULK1 N-terminal knockin (KI) Antisense guide RNA (gRNA) + Cas9n | This paper; MRC PPU Reagents & Services | Cat# DU57403 |
pMA-RQ ULK1 N-terminal GFP donor | This paper; MRC PPU Reagents & Services | Cat# DU57856 |
Software and Algorithms | ||
ImageJ | Schneider et al. 2012 | https://imagej.nih.gov/ij/ |
SoftWoRx | GE Healthcare | N/A |
OMERO | Allan et al., 2012 | http://openmicroscopy.org/ |
Graphpad Prism v8 | GraphPad Prism Inc | https://www.graphpad.com/scientific-software/prism/ |
CK1a spindle localisation quantification macro | Fulcher et al. 2019 | N/A |