REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-Mouse CD45 (clone 30-F11) | Biolegend | Cat# 103126; RRID:AB_493535 |
Anti-Mouse CCR3 (clone J073E5) | Biolegend | Cat# 144510; RRID:AB_2561609 |
Anti-Mouse SiglecE (clone M1304A01) | Biolegend | Cat# 677106; RRID:AB_2566171 |
Anti-Mouse CD45.2 (clone 104) | Biolegend | Cat# 109814; RRID:AB_389211 |
Anti-Mouse CD45.2 (clone 104) | Biolegend | Cat# 109831; RRID:AB_10900256 |
Anti-Mouse CXCR2 (clone SA044G4) | Biolegend | Cat# 149304; RRID:AB_2565692 |
Anti-Mouse CD11b (clone M1/70) | BD Biosciences | Cat# 557657; RRID:AB_396772 |
Anti-Mouse Ly-6G (clone1A8) | BD Biosciences | Cat# 551461; RRID:AB_394208 |
Anti-Mouse Ly-6G (clone1A8) | BD Biosciences | Cat# 560599; RRID:AB_1727560 |
Anti-Mouse Ly-6G (clone1A8) | Biolegend | Cat# 127618; RRID:AB_1877261 |
Anti-Mouse Ly-6G (clone1A8) | Biolegend | Cat# 127602; RRID:AB_1089180 |
Anti-Mouse Ly-6G (clone1A8) | Biolegend | Cat# 127643; RRID:AB_2565971 |
Anti-Mouse SiglecF (clone E50-2440) | BD Biosciences | Cat# 564514; RRID:AB_2738833 |
Anti-Mouse SiglecF (clone E50-2440) | BD Biosciences | Cat# 552125; RRID:AB_394340 |
Anti-Mouse SiglecF (clone E50-2440) | BD Biosciences | Cat# 562681; RRID:AB_2722581 |
Anti-Mouse SiglecF (clone E50-2440) | BD Biosciences | Cat# 565526; RRID:AB_2739281 |
Anti-Mouse B220 (clone RA3-6B2) | BD Biosciences | Cat# 552772; RRID:AB_394458 |
Anti-Mouse CD90.2 (clone 53-2.1) | BD Biosciences | Cat# 561642; RRID:AB_10895975 |
Anti-Mouse CD45.1 (clone A20) | BD Biosciences | Cat# 560578; RRID:AB_1727488 |
Anti-Mouse CD16/32 (clone 93), TruStain FcX | Biolegend | Cat# 101320; RRID:AB_1574975 |
Biological Samples | ||
Lungs from KP1.9 tumor-bearing or tumor-free mice | Mikael Pittet lab | N/A |
Blood from KP1.9 tumor-bearing mice | Mikael Pittet lab | N/A |
Spleens from KP1.9 tumor-bearing mice | Mikael Pittet lab | N/A |
Bone marrow from KP1.9 tumor-bearing mice | Mikael Pittet lab | N/A |
Bronchoalveolar lavage fluid from KP1.9 tumor-bearing or tumor-free mice | Mikael Pittet lab | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
7-aminoactinomycin D | Sigma | Cat# A9400 |
Collagenase type I | Worthington | Cat# LS004197 |
ACK lysis buffer | Lonza | Cat# 10-548E |
Flow Cytometry Absolute Count Standard | Bangs Laboratories | Cat# 580 |
Histopaque-1077 | Sigma-Aldrich | Cat# 10771 |
Histopaque-1119 | Sigma-Aldrich | Cat# 11191 |
Critical Commercial Assays | ||
Fixation/Permeabilization Solution Kit | BD Biosciences | Cat# 554714 |
Zombie Aqua Fixable Viability Kit | Biolegend | Cat# 423102 |
ImmPRESS-AP Anti-Rat IgG, Mouse Adsorbed (alkaline phosphatase) Polymer Detection Kit | Vector Laboratories | Cat# MP-5444 |
BLOXALL endogenous peroxidase blocking solution | Vector Laboratories | Cat# SP6000 |
DAB Quanto Chromogen and Substrate | ThermoFisher Scientific | Cat# TA-060-QHDX |
Deposited Data | ||
Neutrophil single cell RNA sequencing data | (Engblom et al., 2017; Zilionis et al., 2019) | GEO: GSE127465 (Engblom et al., 2017; Zilionis et al., 2019) |
Experimental Models: Cell Lines | ||
Murine KP1.9 lung adenocarcinoma cell line derived from lung tumor nodules of a C57BL/6 KrasLSL-G12D/WT;Trp53flox/flox mouse | Alfred Zippelius | N/A |
Experimental Models: Organisms/Strains | ||
Mouse: C57BL/6J mice | Jackson Laboratory | Cat# 000664; RRID:IMSR_JAX:000664 |
Mouse: B6.SJL-PtprcaPepcb/BoyJ | Jackson Laboratory | Cat# 002014; RRID:IMSR_JAX:002014 |
Software and Algorithms | ||
FlowJo v.8.8.7 and 10.4 | FlowJo, LLC | RRID:SCR_008520 |
BD FACSDiva | BD Biosciences | RRID:SCR_001456 |
GraphPad Prism v.8 | GraphPad Prism | RRID:SCR_002798 |
Python 3.6.7 | Anaconda | https://www.anaconda.com/products/individual |
NanoZoomer Digital Pathology (NDP.view2) | Hamamatsu | https://www.hamamatsu.com/eu/en/product/type/U12388-01/index.html |
Aperio ImageScope | Leica | https://www.leicabiosystems.com/digital-pathology/manage/aperio-imagescope/ |
Scanpy v. 1.4.4.post1 | (Wolf et al., 2018) | https://scanpy.readthedocs.io/en/1.4.4.post1/ |