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. Author manuscript; available in PMC: 2020 Sep 22.
Published in final edited form as: J Biomol Struct Dyn. 2018 Nov 17;37(9):2201–2210. doi: 10.1080/07391102.2018.1483839

Table 2:

Fraction of the total frames (in %) that the structure is present in the five aggregated trajectories and root mean square deviation values using the starting structures as a reference (Figure 1). All residues includes bases 1 through 24, inner residues are bases 3–10 and 15–22. Analysis performed using the full trajectories from the five independent copies.

Population (%) RMSD (Å) All residues RMSD (Å) Inner residues
bsc0 bsc1 OL15 bsc0 bsc1 OL15 bsc0 bsc1 OL15
I-R 55.2 81.1 61.7 2.8 2.2 2.2 2.2 1.8 1.9
I-Rx 56.8 76.4 65.6 2.6 2.2 2.2 2.0 1.7 1.6
II-Ra 79.9 9.3 1.7 4.1 9.8 7.1 3.4 8.8 6.0
II-Rb 94.2 1.3 1.6 3.4 9.0 7.0 2.8 7.9 6.3
II-L 19.7 54.7 56.2 8.6 7.6 8.1 7.8 7.1 7.5
II-Lt 35.5 63.6 62.7 6.3 6.7 4.9 5.9 6.4 4.5