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. Author manuscript; available in PMC: 2020 Sep 22.
Published in final edited form as: J Biomol Struct Dyn. 2018 Nov 17;37(9):2201–2210. doi: 10.1080/07391102.2018.1483839

Table 3:

Average values for the χ angle for all the bases (pyr: O4’-C1’-N1-C2; pur: O4’-C1’-N9-C4. Syn: χ = 60 > χ > 80°; anti: = −115 > χ > 180°; high anti: = −60 > χ > −90°). Analysis performed using every 10th frame of the five independent trajectories run (~53000 frames). Bold-underlined text is syn position.

I-R I-Rx II-Ra II-Rb II-L II-Lt
Base: bsc0 bsc1 OL15 bsc0 bsc1 OL15 bsc0 bsc1 OL15 bsc0 bsc1 OL15 bsc0 bsc1 OL15 bsc0 bsc1 OL15
Chain 1
C 1 29.1 −81.4 4.3 30.5 −73.8 13.0 42.3 −123.7 11.8 46.5 −107.7 52.3 −54.8 −124.2 −88.2 −127.6 −143.4 −130.7
G 2 −95.0 −100.8 −96.5 −94.9 −96.7 −97.0 15.2 −37.0 4.1 45.9 −86.9 56.7 71.8 68.5 70.7 59.4 107.1 67.7
C 3 −123.0 −120.5 −112.3 −122.9 −120.9 −110.4 12.6 −110.8 37.9 44.1 −122.0 60.4 −150.5 −147.1 −132.9 −150.9 −154.3 −144.5
G 4 −105.0 −98.3 −98.4 −104.4 −97.4 −100.7 31.6 25.0 58.6 44.6 19.7 58.8 55.7 67.7 68.1 64.8 100.1 68.0
A 5 −119.2 −113.7 −105.3 −119.1 −113.5 −105.1 45.0 −29.9 43.0 44.1 −11.8 6.3 −52.9 −126.0 −39.5 −90.4 −98.9 −113.8
A 6 −121.6 −116.8 −112.4 −121.8 −116.8 −111.6 45.2 −12.5 40.1 44.8 −18.6 18.4 −29.3 46.6 70.0 70.1 37.3 70.2
T 7 −126.7 −120.2 −119.3 −126.8 −120.0 −117.6 50.1 −33.7 −1.0 49.8 −18.7 14.2 −79.2 −142.9 −104.1 −94.0 −138.6 −148.9
T 8 −123.8 −115.7 −115.1 −123.8 −114.3 −113.9 46.4 −32.3 53.5 46.6 −17.6 34.4 −52.0 45.3 29.9 32.9 31.9 67.0
C 9 −124.0 −110.8 −104.9 −123.9 −113.3 −105.0 40.9 −35.0 48.2 41.1 −21.2 54.2 −108.1 −140.1 −122.7 −102.1 −140.1 −139.8
G 10 −111.1 −106.7 −103.5 −111.2 −105.8 −106.9 45.6 6.3 59.0 45.2 57.8 58.1 40.5 105.3 67.6 25.0 84.8 68.1
C 11 −110.8 −113.0 −103.7 −110.9 −116.7 −103.7 47.2 −125.2 5.5 47.1 −119.7 36.2 −144.7 −142.7 −137.6 −139.2 −142.4 −145.2
G 12 −92.7 −102.2 −106.5 −95.0 −106.9 −92.5 32.7 −91.4 −13.2 38.3 −82.3 55.9 −26.8 −55.3 0.2 20.7 −57.7 38.5
Chain 2
C 13 29.4 −66.3 −12.2 28.6 −65.3 18.4 44.1 −123.5 26.9 46.6 −123.8 31.2 −40.8 −136.3 −68.4 −104.4 −139.1 −105.2
G 14 −95.0 −100.5 −97.3 −95.0 −99.6 −96.5 48.3 −42.3 38.4 47.1 −33.4 57.7 68.5 70.9 71.7 35.7 71.5 70.3
C 15 −123.4 −119.9 −111.7 −123.0 −118.9 −111.3 44.1 −98.9 51.2 43.9 −58.2 36.7 −150.8 −153.8 −137.5 −136.5 −146.0 −148.0
G 16 −104.4 −98.1 −98.7 −104.7 −99.8 −100.9 42.5 12.2 58.3 42.5 33.7 58.9 39.5 100.2 67.9 53.7 66.3 68.2
A 17 −119.1 −113.8 −105.5 −118.9 −113.2 −105.2 44.1 −0.7 41.3 45.1 23.6 27.0 −46.8 −94.9 −45.4 −37.3 −103.5 −111.7
A 18 −121.6 −116.9 −112.4 −121.7 −117.1 −111.5 45.5 −23.6 39.4 44.8 −2.1 21.6 −29.0 45.3 70.5 32.6 34.7 75.2
T 19 −126.8 −120.1 −119.3 −126.8 −120.2 −117.8 49.8 −31.1 19.4 49.6 −21.0 3.6 −105.5 −140.9 −100.4 −126.6 −137.0 −142.9
T 20 −123.6 −115.5 −115.1 −123.7 −115.5 −113.8 45.5 −60.7 42.6 45.2 −28.6 6.7 −63.3 44.9 31.0 15.8 28.5 31.1
C 21 −124.1 −111.5 −104.7 −124.0 −110.7 −104.8 15.9 −74.1 47.9 41.8 −26.6 38.0 −100.3 −139.9 −118.9 −147.4 −147.2 −138.4
G 22 −111.2 −105.8 −103.3 −111.2 −106.3 −107.1 16.9 17.7 47.7 45.4 −39.2 59.0 69.2 71.9 68.0 63.3 112.5 67.8
C 23 −110.5 −114.2 −103.2 −110.7 −113.4 −103.5 4.6 −122.8 −14.0 43.9 −114.5 54.0 −145.7 −142.0 −136.9 −148.8 −149.2 −144.4
G 24 −97.7 −103.1 −105.2 −89.6 −100.7 −97.0 13.0 −78.4 −28.4 37.7 −92.5 55.1 −20.6 −64.1 4.1 38.5 −56.7 28.7