Table 4.
Distribution of individuals (by direct gene counting and by inference) in 105 populations for the 10 possible genotypes of the 2-SNP haplotype based on rs1800407, rs12913832.
| Ten possible genotypes | Direct counting | Inferred by PHASE from double heterozygotes | Inferred missing genotype | Total individuals | Observed in populations | |
|---|---|---|---|---|---|---|
| CA | CA | 4,643 | 0 | 179 | 4,822 | |
| CA | CG | 885 | 0 | 40 | 925 | |
| CG | CG | 676 | 0 | 18 | 694 | |
| CA | TA | 131 | 0 | 6 | 137 | |
| CG | TA | 0 | 87 | 0 | 87 | |
| CG | TG | 35 | 0 | 0 | 35 | |
| TA | TA | 13 | 0 | 1 | 14 | |
| CA | TG | 0 | 8 | 0 | 8 | |
| TA | TG | 2 | 0 | 0 | 2 | CEU, IBS |
| TG | TG | 1 | 0 | 0 | 1 | GBR |
| Total | 6,386 | 95 | 244 | 6,725 | ||