Table IV.

Gene sets enriched in phenotype low.

MSigDB collection	Gene set name	NES	NOM P-value	FDR q-value
c2.cp.biocarta.v6.2.symbols.gmt	BIOCARTA_VEGF_PATHWAY	−1.681	0.027	0.072
	BIOCARTA_PTEN_PATHWAY	−1.703	0.025	0.070
	BIOCARTA_PDGF_PATHWAY	−1.896	0.000	0.042
	BIOCARTA_ATRBRCA_PATHWAY	−1.690	0.025	0.069
	BIOCARTA_CARM_ER_PATHWAY	−1.698	0.019	0.069
h.all.v6.2.symbols.gmt	HALLMARK_DNA_REPAIR	−1.722	0.044	0.069
	HALLMARK_KRAS_SIGNALING_DN	−1.675	0.009	0.073
	HALLMARK_PI3K_AKT_MTOR_SIGNALING	−1.777	0.008	0.057
	HALLMARK_G2M_CHECKPOINT	−2.278	0.000	0.005

MSigDB, Molecular Signatures Database; VEGF, vascular endothelial growth factor; PDGF, platelet-derived growth factor; ATR, ataxia-telangiectasia and Rad3-related; CARM, coactivator associated arginine methyltransferase; ER, estrogen receptor; FDR, false discovery rate; NES, normalized enrichment score; NOM, nominal.