TABLE 2.
Sample | Raw reads | Clean reads | Total mapped | Multiple mapped | Uniquely mapped |
A_1_1 | 95,070,396 | 90,140,748 (94.81%) | 68,921,334 (76.46%) | 2,510,198 (2.78%) | 66,411,136 (73.67%) |
A_1_2 | 95,386,604 | 90,562,700 (94.94%) | 71,317,689 (78.75%) | 2,896,374 (3.20%) | 68,421,315 (75.55%) |
A_1_3 | 98,029,082 | 92,699,826 (94.56%) | 72,020,838 (77.69%) | 2,679,887 (2.89%) | 69,340,951 (74.80%) |
B_2_1 | 96,622,226 | 91,173,512 (94.36%) | 67,805,686 (74.37%) | 6,443,523 (7.07%) | 61,362,163 (67.30%) |
B_2_2 | 96,239,174 | 91,922,114 (95.51%) | 66,710,930 (72.57%) | 5,541,344 (6.03%) | 61,169,586 (66.55%) |
B_2_3 | 96,343,382 | 90,217,708 (93.64%) | 60,737,386 (67.32%) | 4,662,151 (5.17%) | 56,075,235 (62.16%) |
C_3_1 | 95,721,552 | 91,153,382 (95.23%) | 71,011,936 (77.90%) | 10,055,963 (11.03%) | 60,955,973 (66.87%) |
C_3_2 | 95,830,852 | 91,285,636 (95.26%) | 72,297,477 (79.20%) | 1,278,4703 (14.01%) | 59,512,774 (65.19%) |
C_3_3 | 97,999,946 | 93,132,198 (95.03%) | 73,007,033 (78.39%) | 12,142,118 (13.04%) | 60,864,915 (65.35%) |
D_4_1 | 98,391,502 | 92,247,994 (93.76%) | 65,722,331 (71.25%) | 8,110,885 (8.79%) | 57,611,446 (62.45%) |
D_4_2 | 98,380,634 | 93,523,450 (95.06%) | 73,108,525 (78.17%) | 10,076,310 (10.77%) | 63,032,215 (67.40%) |
D_4_3 | 96,840,342 | 92,390,402 (95.40%) | 73,089,193 (79.11%) | 9,858,949 (10.67%) | 63,230,244 (68.44%) |