Table 7.
Possible putative candidate genes identified from the hotspot QTL regions for weed competitive ability (WCA) traits in rice
| No. | Chromosome | CDS coordinates (5′–3′) | Name of the loci/gene | Locus | Nucleotide length (bp) | |
|---|---|---|---|---|---|---|
| Start | End | |||||
| 1 | 11 | 22040368 | 22044971 | Pentatricopeptide repeat domain containing protein, putative, expressed | LOC_Os11g37330.1 | 2085 |
| 2 | 11 | 22550213 | 22554890 | Targeting protein for Xklp2, putative, expressed | LOC_Os11g38010.1 | 1224 |
| 3 | 11 | 24727308 | 24727862 | ATBPM6, putative | LOC_Os11g41240.1 | 555 |
| 4 | 11 | 24780333 | 24781296 | Hypothetical protein | LOC_Os11g41320.1 | 240 |
| 5 | 11 | 27997070 | 27991732 | Tetratricopeptide repeat domain containing protein, expressed | LOC_Os11g46230.1 | 2094 |
| 6 | 12 | 14845431 | 14838519 | SAP domain containing protein, expressed | LOC_Os12g25640.1 | 537 |
| 7 | 12 | 14933967 | 14933192 | Expressed protein | LOC_Os12g25760.1 | 354 |
| 8 | 12 | 16278035 | 16279881 | Hypothetical protein | LOC_Os12g27650.1 | 495 |
| 9 | 12 | 17441549 | 17443641 | ZmEBE-1 protein, putative, expressed | LOC_Os12g29370.1 | 909 |
| 10 | 12 | 17786025 | 17788513 | The protein of unknown function DUF502 domain-containing protein, expressed | LOC_Os12g29750.1 | 825 |
| 11 | 12 | 17900930 | 17903046 | Nodulin, putative, expressed | LOC_Os12g29950.1 | 1800 |
| 12 | 12 | 19779505 | 19786587 | Flavin monooxygenase, putative, expressed | LOC_Os12g32750.1 | 1347 |
| 13 | 12 | 25790709 | 25796385 | Expressed protein | LOC_Os12g41670.1 | 17,331 |