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. 2020 Sep 22;5(5):e00382-20. doi: 10.1128/mSystems.00382-20

TABLE 1.

Binding of knowledge-based reference molecules to estimate minimum binding energy

Molecule name Docking
score
MM/GBSA
ΔGbind
(kcal/mol)
Important residue interactions
Phosphatidylethanolamine −3.648 −62.39 H bond (Lys795, Ser803), salt bridge
(Asp808)
Phosphatidylcholine −1.231 −51.883 H bond (Lys790, Lys795), salt bridge
(Lys790)
FAD −6.764 −50.823 H bond (Pro807, Lys814, Ile788), salt
bridge (Lys814)
Phosphatidyl-l-serine −4.847 −42.266 H bond (Thr791), salt bridge (Lys790)