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. Author manuscript; available in PMC: 2021 Sep 21.
Published in final edited form as: Curr Biol. 2020 Jul 23;30(18):3556–3569.e5. doi: 10.1016/j.cub.2020.06.077

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited Data
Datasets This paper https://doi.org/10.17605/OSF.IO/PM89Y
Experimental Models: Organisms/Strains
Rat: Long-Evans Harlan Industries
Software and Algorithms
Data Acquisition Software Cheetah (Neuralynx) https://neuralynx.com
Analysis Software MATLAB v2017, 2018, 2019 https://www.mathworks.com/
Analysis Software RStudio https://rstudio.com/
Custom Code for Data Analysis This paper https://github.com/ryanharvey1/ephys_tools
Pass Index [109] https://github.com/jrclimer/Pass_Index
Theta-rhythmicity [67] https://github.com/jrclimer/mle_rhythmicity
Circular Statistics Toolbox [110] https://www.mathworks.com/matlabcentral/fileexchange/10676-circular-statistics-toolbox-directional-statistics
Spike Sorting Klustakwik http://klustakwik.sourceforge.net/
Spike Sorting Kilosort2 https://github.com/MouseLand/Kilosort2
Spike sorting MClust https://github.com/adredish/MClust-Spike-Sorting-Toolbox
Spike sorting Phy https://github.com/cortex-lab/phy
Other
Custom electrodes (8 tetrodes) Custom built
Halo-18 Microdrive (16 tetrodes) Neuralynx https://neuralynx.com/hardware/halo-18-microdrive
Digital Neuralynx recording system, Lynx SX Neuralynx https://neuralynx.com
17um dia nichrome wire California fine wire https://www.calfinewire.com/index.html