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. Author manuscript; available in PMC: 2021 Sep 21.
Published in final edited form as: Curr Biol. 2020 Jul 23;30(18):3570–3579.e6. doi: 10.1016/j.cub.2020.06.092

Key Resource Table

REAGENT or RESOURCE SOURCE IDENTIFIER
Critical Commercial Assays
Chemagic DNA Tissue extraction PerkinElmer CAT# CMG-1423
TruSeq PCR-Free Library Kit Illumina CAT# FC-121–3003
Deposited Data
Raw genomic data NCBI SRA PRJNA602495
Behavioral and processed genomic data This paper https://github.com/noahrose/aaeg_adaptation_human_hosts
Experimental Models: Organisms/Strains
Aedes aegypti laboratory colonies (see Table S2) This paper N/A
Software and Algorithms
ADMIXTURE [25] http://software.genetics.ucla.edu/admixture/
PCAdapt [26] https://cran.r-project.org/web/packages/pcadapt/
VCFtools [44] https://vcftools.github.io
BWA-MEM [45] http://bio-bwa.sourceforge.net
bcftools [46] http://samtools.github.io/bcftools
PicardTools [47] https://broadinstitute.github.io/picard/
GATK [48] https://gatk.broadinstitute.org/
ANGSD [49] http://www.popgen.dk/angsd
R [50] https://www.r-project.org/
glmmTMB [51] https://cran.r-project.org/web/packages/glmmTMB
Emmeans [52] https://cran.r-project.org/web/packages/emmeans
MonoPoly [54] https://cran.r-project.org/web/packages/MonoPoly
PLINK [55] http://zzz.bwh.harvard.edu/plink/
Dsuite [56] https://github.com/millanek/Dsuite
ngsTools [57] https://github.com/mfumagalli/ngsTools
Other
Custom data analysis scripts This paper https://github.com/noahrose/aaeg_adaptation_human_hosts