Table 2. The results of the subgraph patterns and motif patterns identified by PatternFinder, LoTo and acc-Motif.
The integers listed along the row “PatternFinder” and “LoTo” denote the decimal representation of the subgraphs and the integers listed along the row “acc-Motif” denote the acc-Motif IDs.
| Cancer | Tools | 3-Node subgraph pattern ID | ||||
|---|---|---|---|---|---|---|
| AML | PatternFinder | 6 | 12 | 36 | 38 | |
| LoTo | 6 | 12 | 36 | 38 | ||
| acc-Motif | 1,120 | 11,011 | 21,010 | 21,120 | ||
| Frequency ± sd | 72.73 ± 3.26 | 45.69 ± 5.58 | 20.54 ± 2.49 | 3.15 ± 1.88 | ||
| Breast | PatternFinder | 6 | 12 | 36 | 38 | |
| LoTo | 6 | 12 | 36 | 38 | ||
| acc-Motif | 1,120 | 11,011* | 21,010 | 21,120 | ||
| frequency ± sd | 44.89 ± 5.62 | 42.24 ± 6.75 | 37.02 ± 3.14 | 3.53 ± 2.88 | ||
| Colorectal | PatternFinder | 6 | 12 | 36 | 38 | 98 |
| LoTo | 6 | 12 | 36 | 38 | 1 | |
| acc-Motif | 1,120 | 11,011 | 21,010* | 21,120 | 111,111* | |
| frequency ± sd | 29.71 ± 1.25 | 38.86 ± 3.53 | 24 ± 0.58 | 1.14 ± 0.9 | 0.43 ± 0.79 | |
Notes:
*
Indicates a significant pattern, p < 0.05.
Capital letters A–S denote the acc-Motif ID, that is, A = 905928928928; B = 243329587587; C = 6184; D = 4118; E = 4119; F = 4126; G = 682682684684; H = 507557800800; I = 80637637639; J = 4625; K = 4259; L = 5377; M = 4261; N = 4263; O = 423423423573; P = 4389; Q = 4197; R = 101223223480; S = 208208210840.