TABLE 2.
Nucleotide variations in 16 haplotypes of atp6‐orf79‐like structures
| Reference positions a | Variation types | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1,008 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A |
| 1,011–1,115 | Sub. | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 105 | 49 |
| 1,063 | SNP | C | C | C | C | C | C | G | C | C | C | C | C | C | C | C | C |
| 1,123 | SNP | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | T |
| 1,125 | Ins. | T | T | ||||||||||||||
| 1,128–1,136 | Sub. | 9 | 9 | 9 | 9 | 12 | 9 | 9 | 9 | 9 | 9 | 9 | 9 | 9 | 9 | 9 | 9 |
| 1,149 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | A |
| 1,153 | SNP | A | A | A | A | A | A | A | A | A | G | G | G | G | A | A | A |
| 1,159–1,203 | Sub. | 45 | 45 | 45 | 45 | 45 | 45 | 45 | 45 | 45 | 51 | 51 | 51 | 53 | 46 | 55 | 45 |
| 1,206 | SNP | A | A | A | A | A | A | A | C | C | C | C | C | C | C | C | C |
| 1,210 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T |
| 1,214 | Ins. | 4 | 4 | 4 | |||||||||||||
| 1,214 | SNP | A | A | A | A | A | T | T | A | A | A | C | C | C | A | A | C |
| 1,215 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T |
| 1,218 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | C | C | T | T |
| 1,219 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G | G |
| 1,220 | SNP | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 1,225 | SNP | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | G |
| 1,234 | SNP | G | G | G | G | G | G | G | G | G | C | C | C | C | G | G | G |
| 1,363 | SNP | A | A | A | A | A | A | A | A | A | T | T | T | T | A | G | C |
| 1,367 | SNP | A | A | A | C | A | A | A | C | C | A | A | A | A | A | A | C |
| 1,368 | SNP | A | A | A | A | A | A | A | T | T | C | C | C | C | A | A | T |
| 1,399 | SNP | C | C | C | C | C | C | C | C | T | C | T | T | T | C | C | C |
Abbreviations: Ins., small insertions; SNP, single nucleotide polymorphisms; Sub., block substitutions.
a
Nucleotide positions of H1 were used as the reference positions for all loci.