Table 1. Fractions of ADR1s and/or NRG1s synergistic, redundant, and specific gene up-regulation during ETI.
| RPS4 | RPS2 | RPM1 | ||||
|---|---|---|---|---|---|---|
| 4 hpi | 8 hpi | 4 hpi | 8 hpi | 4 hpi | 8 hpi | |
| RNL dependent |
86.8% (486/560) |
96.9% (1,404/1,449) |
47.2% (417/883) |
25.3% (463/1,831) |
39.0% (667/1,712) |
16.8% (458/2,725) |
| →Shared regulation |
67.1% (326/486) |
60.0% (842/1,404) |
59.5% (248/417) |
63.3% (293/463) |
67.0% (447/667) |
65.3% (229/458) |
| ➢ Synergistic | 63.6% (309/486) |
36.5% (512/1,404) |
46.0% (192/417) |
35.4% (164/463) |
52.3% (349/667) |
44.3% (203/458) |
| ➢ Redundant | 3.5% (17/486) |
23.5% (330/1,404) |
13.4% (56/417) |
27.9% (129/463) |
14.7% (98/667) |
21.0% (96/458) |
| → Specific regulation |
32.9% (160/486) |
40.0% (562/1,404) |
40.5% (169/417) |
36.7% (170/463) |
33.0% (220/667) |
34.7% (159/458) |
| ➢ ADR1s specific | 74.4% (119/160) |
72.4% (407/562) |
78.1% (132/169) |
60.6% (103/170) |
62.3% (137/220) |
49.7% (79/159) |
| ➢ NRG1s specific | 25.6% (41/160) |
27.6% (155/562) |
21.9% (37/169) |
39.4% (67/170) |
37.7% (83/220) |
50.3% (80/159) |
Fractions are defined according to the gene sets and functional categories defined in the text. The “RNL-dependent” fraction is the fraction of “ETI-regulated” genes that require RNLs, whereas the others are fractions of the “RNL-dependent” category. “Shared” is the addition of synergistic and redundant fractions, and “Specific” is the addition of “ADR1s-specific” and “NRG1s-specific” fractions. Fractions of main interest are in bold.
Abbreviations: ADR1, ACTIVATED DISEASE RESISTANCE 1; ETI, effector-triggered immunity; hpi, hours post infection; NRG1, N REQUIEREMNET GENE 1; RNL, RPW8 CC-domain NLR; RPM, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1; RPS2, RESISTANT TO P. SYRINGAE 2; RPS5, RESISTANT TO P. SYRINGAE 5