Table 1.
PolA DNA Pols used in phylogenetic analysis; shortened protein names are as detailed in Figure 1C (* denotes proteins that contained both PolA and helicase domains)
| Protein | Accession no. | Database annotation [organism] |
|---|---|---|
| AthA | AAG50942.1 | DNA polymerase A family protein, putative [Arabidopsis thaliana] |
| AthB | NP_188690.3 | Polymerase gamma 1 [Arabidopsis thaliana] |
| AthC* | NP_001078482.1 | MUS308 and mammalian DNA polymerase-like protein [Arabidopsis thaliana] |
| AthD | NP_001321058.1 | polymerase gamma 2 [Arabidopsis thaliana] |
| BtaA* | XP_002684835.1 | DNA polymerase theta isoform X1 [Bos taurus] |
| BtaB | XP_002688485.4 | DNA polymerase nu [Bos taurus] |
| CcrA | XP_005717334.1 | Unnamed protein product [Chondrus crispus] |
| CcrB | XP_005719396.1 | DNA polymerase type I with a mitochondrial signal peptide [Chondrus crispus] |
| CdiA | AJP10819.1 | DNA polymerase I (POLI) [Clostridioides difficile 630] |
| CelA* | NP_001367994.1 | DNA polymerase theta [Caenorhabditis elegans] |
| DdiA | XP_640197.1 | Hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4] |
| DdiB | XP_642487.1 | Hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4] |
| DdiC | XP_644204.1 | Hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4] |
| DdiD | XP_647557.1 | Mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] |
| DmeA* | NP_524333.1 | DNA polymerase theta [Drosophila melanogaster] |
| EcoA | AIN34166.1 | Fused DNA polymerase I 5′-_3′ polymerase/3′-_5′ exonuclease/5′-_3′ exonuclease [Escherichia coli BW25113] |
| HsaA | BAD18421.1 | Unnamed protein product [Homo sapiens] |
| HsaB | NP_861524.2 | DNA polymerase nu [Homo sapiens] |
| HsaC* | NP_955452.3 | DNA polymerase theta [Homo sapiens] |
| HvuA* | XP_012557649.1 | PREDICTED: DNA polymerase theta-like isoform X2 [Hydra vulgaris] |
| LmaA | XP_001687691.1 | Putative mitochondrial DNA polymerase I protein C [Leishmania major strain Friedlin] |
| LmaB | XP_001683604.1 | Putative DNA polymerase theta [Leishmania major strain Friedlin] |
| LmaC | XP_001686222.1 | Putative mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] |
| OsaA | XP_015636766.1] | DNA polymerase I A, chloroplastic-like isoform X1 [Oryza sativa Japonica Group |
| OsaB | XP_015650231.1 | DNA polymerase I B, mitochondrial isoform X3 [Oryza sativa Japonica Group] |
| OsaC | XP_015650956.1 | DNA polymerase I A, chloroplastic [Oryza sativa Japonica Group] |
| OsaD* | XP_015619406.1 | Helicase and polymerase-containing protein TEBICHI [Oryza sativa Japonica Group] |
| PfaA | XP_966236.1 | DNA polymerase 1, putative [Plasmodium falciparum 3D7] |
| PfaB | XP_001348285.1 | plastid replication-repair enzyme [Plasmodium falciparum 3D7] |
| SauA | ADC37860.1 | DNA polymerase I [Staphylococcus aureus 04-02981] |
| TbbA | XP_828630.1 | DNA polymerase theta, putative [Trypanosoma brucei brucei TREU927] |
| TbbB | XP_844445.1 | Mitochondrial DNA polymerase I protein A, putative [Trypanosoma brucei brucei TREU927] |
| TbbC | XP_846022.1 | Mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei TREU927] |
| TcrA | XP_810416.1 | Mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL Brener] |
| TcrB | XP_817509.1 | Mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain CL Brener] |
| TcrC | XP_818250.1 | DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi strain CL Brener] |
| TpsA | XP_002291263.1 | DNA polymerase [Thalassiosira pseudonana CCMP1335] |
| TpsB | XP_002294547.1 | Hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana CCMP1335] |
| VchA | EKL09444.1 | DNA polymerase I family protein [Vibrio cholerae HC-55C2] |