Table 3.

Processing and model estimate reference of conditions in the iterative study

Prefix	Description	Label	Label description
I	Ignore biases	0	No specific regions removed
		1	Repeated regions removed, GC and TSD corrected
S	N' and C'-termini	0	No terminal sides removal
		10	CPD defined terminals
F	Filter of reads	0	No filter
		3	Filter out positions with read count <3
		E	Filter out read <95th percentile of read counts on E genes gold set
		T	Filter out read count <5th percentile and read count >95th percentile
M	Model	Name	Poisson, Gamma, Gumbel, GMM and BGMM
C	Criteria	Criterion	Absolute, fold-change or threshold 0.01 (for Poisson, Gamma, Gumbel)
	Components	2, 3, 4	Number of component (for GMM and BGMM)