Table 2.
Candidate reference genes for qPCR.
| Gene (NCBI accession number) |
Primer sequence | Amplicon length (bp) | Ta (°C) | Tm (°C) |
|---|---|---|---|---|
|
60S |
Fw: ATCTACCTCAAGCTCCTAGTC Rev: CAATCTTGTCCTCCTTTCCT |
165 | 60 | 79.6 |
|
TTC7B |
Fw: GCTCTGTTGTTGAAGATGGG Rev: GGAAGCAGTTTGTAGCATCAG |
156 | 60 | 79.9 |
|
EF1α |
Fw: GAACTGGGTGCTTGATAGGC Rev: ACCAAAATATCCGGAGTAAAAGA |
164 | 60 | 79.7 |
|
UBQ |
Fw: GCCCTGCACTTACCATCTTTAAG Rev: GAGGGTCGTCAGGATTTGGA |
75 | 60 | 78.9 |
|
SAND |
Fw: CAACATCCTTTACCCATTGACAGA Rev: GCATTTGATCCACTTGCAGATAAG |
76 | 60 | 79.2 |
|
GAPDH |
Fw: TCAAGGTCAAGGACTCTAACACC Rev: CCAACAACGAACATAGGAGCA |
226 | 60 | 81.3 |
|
ACTINa |
Fw: ATTCCTCACCATCATCAGCA Rev: GACCCCCTCCTACTAAAACT |
89 | 55 | 77.5 |
|
α-TUB |
Fw: CAGCCAGATCTTCACGAGCTT Rev: GTTCTCGCGCATTGACCATA |
119 | 60 | 78.8 |
|
AP2M |
Fw: CCTCTCTGGAATGCCTGATTT Rev: CTTTAGCAGGACGGGATTTA |
89 | 55 | 75.0 |
|
β-TUB |
Fw: TGAACCACTTGATCTCTGCGACTA Rev: CAGCTTGCGGAGGTCTGAGT |
86 | 60 | 82.3 |
Genes, gene accession numbers, primer sequences (Fw, forward; Rev, reverse), amplicon length (bp, base pairs) and qPCR annealing (Ta) and melting (Tm) temperatures are indicated.
aAlternative splicing variant.