Table 3.
Top DMPs.
| Probe ID | FDR | Delta Beta | Symbol | Distance |
|---|---|---|---|---|
| cg16465027 | 1.14E-14 | -0.20 | PHACTR1 | 122016 |
| cg19269426 | 1.80E-12 | -0.22 | GGPS1 | 0 |
| cg07839457 | 6.58E-12 | -0.23 | NLRC5 | 435 |
| cg16240683 | 1.24E-10 | 0.22 | ZNF436-AS1 | 0 |
| cg24129356 | 4.02E-09 | -0.22 | HLA-DMA | 0 |
| cg22718139 | 1.05E-08 | 0.25 | HMGCS2 | 0 |
| cg26974214 | 5.56E-08 | -0.23 | LIPA | 0 |
| cg02806715 | 3.03E-07 | -0.20 | HLA-DMA | 0 |
| cg09321817 | 7.33E-07 | -0.25 | HLA-DPA1 | 0 |
| cg01804934 | 2.60E-05 | -0.21 | HLA-DPA1 | 0 |
| cg23045908 | 6.30E-05 | -0.21 | PDE4B | 0 |
| cg06061086 | 9.70E-04 | -0.20 | FOXP4 | 14522 |
Differentially methylated positions (DMPs) with a mean difference between groups of at least 20% (delta-beta -CBrk- 20, FDR -OBrk- 0.05). Probe ID: Illumina probe reference, logFC: logarithmic fold-change between groups (IBD vs. control), FDR: false discovery rate, Symbol: gene symbol, Distance: distance in base pairs to the closest gene. Full list of DMPs can be found in Supplementary Table S1.