Table 1.
Summary of de novo genome assemblies of the AF, TF and M genomes, read mapping statistics, BUSCO completeness assessment results, number of predicted genes and the percent of repetitive elements detected in each genome.
| Arrhenogenic Female (AF) | Thelygenic Female (TF) | Male (M) | |
|---|---|---|---|
| No. of processed reads | 134,541,815 | 102,695,597 | 85,597,908 |
| N50 (bp) | 4101 | 3889 | 4164 |
| Mean contig (bp) | 2588 | 2606 | 2638 |
| No. of contigs | 114,048 | 107,111 | 109,341 |
| No. of mapped reads (%) | 127,991,372 (95.13%) | 98,025,293 (95.45%) | 82,377,083 (96.24%) |
| Mean coverage | 43X | 34X | 28X |
| Estimated genome size (Expected: 426 Mb31) |
295,268,734 bases 295 Mb |
279,238,173 bases 279 Mb |
288,503,435 bases 289 Mb |
| BUSCO—complete* | 993 (93.1%) | 989 (92.8%) | 994 (93.3%) |
| Repetitive elements % | 6.84% | 6.61% | 6.89% |
| No. of predicted genes (mean length, bp) |
13,910 3345 |
13,590 3271 |
13,798 3233 |
| Predicted genes with BLAST hits (%) | 93.45% | 94.42% | 94.22% |
* Arthropoda database of 1066 BUSCO groups. For full list, see Table S1.