Table 2.
List of 26 differentially expressed transcripts associated with some biosynthetic pathways and flower-related genes in olive’s leaf samples, ON- vs. OFF-trees.
| Seq-ID | GenBank accession | Description | GO names | log2 fold change | padj* | |
|---|---|---|---|---|---|---|
| Photosynthesis and carbohydrates metabolism | TRINITY_DN87930_c2_g2_i8 | YP_003359367.1 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) | F:magnesium ion binding; F:monooxygenase activity; C:chloroplast; P:photorespiration; F:ribulose-bisphosphate carboxylase activity; P:reductive pentose-phosphate cycle; P:oxidation-reduction process | 3.38 | 0.00 |
| TRINITY_DN79063_c1_g1_i9 | XP_022872657.1 | Long-chain-alcohol oxidase FAO4A-like | C:intracellular; C:integral component of membrane; F:lyase activity; F:long-chain-alcohol oxidase activity; F:flavin adenine dinucleotide binding; P:oxidation-reduction process | 9.87 | 0.04 | |
| TRINITY_DN84614_c6_g1_i3 | XP_006492594.1 | UDP-glucose 4-epimerase GEPI48 | F:UDP-glucose 4-epimerase activity; P:galactose metabolic process | − 7.39 | 0.02 | |
| TRINITY_DN82831_c0_g1_i8 | XP_022881139.1 | Probable trehalose-phosphate phosphatase F | F:trehalose-phosphatase activity; P:trehalose biosynthetic process; P:dephosphorylation | 8.79 | 0.03 | |
| TRINITY_DN83157_c0_g11_i1 | XP_022871541.1 | Probable galactinol--sucrose galactosyltransferase 6 isoform X1 | F:galactinol-sucrose galactosyltransferase activity | − 2.99 | 0.04 | |
| TRINITY_DN82827_c0_g2_i4 | XP_022863390.1 | Probable galactinol--sucrose galactosyltransferase 6 | F:galactinol-sucrose galactosyltransferase activity | 24.92 | 0.00 | |
| TRINITY_DN82882_c2_g2_i16 | XP_022872970.1 | Probable alpha-amylase 2 | F:alpha-amylase activity; F:calcium ion binding; P:carbohydrate metabolic process; F:alpha-amylase activity (releasing maltohexaose) | − 3.14 | 0.03 | |
| TRINITY_DN82882_c2_g2_i18 | XP_022872971.1 | Probable alpha-amylase 2 | F:alpha-amylase activity; F:calcium ion binding; P:carbohydrate metabolic process; F:alpha-amylase activity (releasing maltohexaose) | − 2.13 | 0.00 | |
| TRINITY_DN82733_c0_g1_i6 | XP_022869919.1 | Bidirectional sugar transporter SWEET2 | C:plasma membrane; C:integral component of membrane; P:carbohydrate transmembrane transport; F:sugar transmembrane transporter activity | − 9.10 | 0.02 | |
| Photosynthesis and carbohydrates metabolism | TRINITY_DN80957_c1_g1_i2 | XP_022861297.1 | Expansin-A1 isoform X1 | C:extracellular region; C:cell wall; P:plant-type cell wall organization; C:membrane | 3.19 | 0.01 |
| TRINITY_DN87529_c3_g4_i6 | AUB30489.1 | Ribosomal protein subunit S3 (mitochondrion) | F:structural constituent of ribosome; C:mitochondrion; C:ribosome; P:translation; F:rRNA binding | 2.26 | 0.02 | |
| TRINITY_DN78435_c0_g5_i3 | XP_022871821.1 | 40S ribosomal protein S9 | F:structural constituent of ribosome; F:rRNA binding; C:cytosolic small ribosomal subunit; P:positive regulation of translational fidelity | 2.96 | 0.01 | |
| TRINITY_DN82900_c2_g1_i6 | XP_022880916.1 | 40S ribosomal protein S4-3-like | F:structural constituent of ribosome; C:ribosome; P:translation; F:rRNA binding | 8.31 | 0.00 | |
| TRINITY_DN82174_c3_g2_i7 | XP_022887249.1 | 40S ribosomal protein S14-2 | P:ribosomal small subunit assembly; P:maturation of SSU-rRNA from tricistronicrRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); F:structural constituent of ribosome; P:translation; C:cytosolic small ribosomal subunit; F:mRNA 5'-UTR binding; F:small ribosomal subunit rRNA binding | 3.14 | 0.00 | |
| TRINITY_DN84461_c2_g1_i3 | XP_022897996.1 | 60S ribosomal protein L31 | P:cytoplasmic translation; F:structural constituent of ribosome; C:cytosolic large ribosomal subunit | 7.07 | 0.03 | |
| TRINITY_DN88027_c3_g2_i2 | XP_022876819.1 | 30S ribosomal protein S11, chloroplastic | C:integral component of membrane | 2.94 | 0.00 | |
| TRINITY_DN86837_c1_g2_i1 | XP_022841910.1 | Ribosomal protein S10 | F:ATP binding; C:mitochondrion; C:ribosome; P:ATP synthesis coupled proton transport | 2.48 | 0.00 | |
| Phenolic antioxidant compounds and enzymes related genes | TRINITY_DN84914_c2_g2_i13 | XP_022862158.1 | 4-Coumarate--CoA ligase-like 7 | P:metabolic process; C:integral component of membrane; F:ligase activity | − 6.85 | 0.05 |
| TRINITY_DN88365_c5_g2_i3 | XP_022880295.1 | Caffeic acid 3-O-methyltransferase-like | F:O-methyltransferase activity; F:S-adenosylmethionine-dependent methyltransferase activity; P:aromatic compound biosynthetic process; P:methylation; F:protein dimerization activity | − 3.58 | 0.02 | |
| TRINITY_DN81593_c2_g2_i7 | XP_022877955.1 | Peroxidase 42-like | F:peroxidase activity; C:extracellular region; P:response to oxidative stress; F:heme binding; P:hydrogen peroxide catabolic process; F:metal ion binding; P:oxidation-reduction process; P:cellular oxidant detoxification | 5.32 | 0.00 | |
| TRINITY_DN84441_c0_g1_i6 | XP_022893074.1 | Pentatricopeptide repeat-containing protein | F:peroxidase activity; P:response to oxidative stress; F:heme binding; P:oxidation-reduction process; P:cellular oxidant detoxification | 8.58 | 0.00 | |
| TRINITY_DN78486_c0_g1_i14 | XP_022888361.1 | Superoxide dismutase (Fe), chloroplastic | F:superoxide dismutase activity; P:removal of superoxide radicals; F:metal ion binding; P:oxidation-reduction process | − 2.12 | 0.02 | |
| TRINITY_DN86273_c4_g1_i17 | XP_022895137.1 | Monodehydroascorbatereductase 4, peroxisomal | C:integral component of membrane; F:monodehydroascorbate reductase (NADH) activity; F:flavin adenine dinucleotide binding; P:oxidation-reduction process | 8.68 | 0.04 | |
| Polyamines | TRINITY_DN79434_c1_g2_i1 | XP_022844785.1 | S-adenosylmethionine decarboxylase proenzyme-like | F:adenosylmethionine decarboxylase activity; C:cytosol; P:S-adenosylmethioninamine biosynthetic process; P:spermine biosynthetic process; P:spermidine biosynthetic process | 8.19 | 0.04 |
| TRINITY_DN83869_c1_g2_i1 | XP_022880237.1 | Lysine-specific histone demethylase 1 homolog 1 | F:DNA binding; C:nucleus; F:methyltransferase activity; P:histone deacetylation; P:root development; P:histone H3-K4 methylation; acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity; F:spermine:oxygen oxidoreductase (spermidine-forming) activity; P:oxidation-reduction process | 7.52 | 0.01 | |
| Phytohormones | TRINITY_DN84754_c0_g1_i11 | XP_012839200.1 | Zeaxanthinepoxidase, chloroplastic-like | F:monooxygenase activity; P:oxidation-reduction process; F:FAD binding | 2.08 | 0.03 |
*Adjusted p-value.