Table 3.

DEGs consistent across multiple cell types or specific to each cell type. The log fold changes in each cell type are given (all p-values shown reach <0.01; details Supplementary Table 5).

	Astrocytes	Endothelial	Ependymal	Microglia	Neurons1	Neurons2	Schwann cells	OM	OPC	VLMC	unknown
DEGs consistent across cell types
Sod1	2.51	2.43	2.41	1.62	2.78	2.27	3.11	3.34	2.14	2.41	2.04
Malat1	−0.76	−0.25	–	−0.27	−0.24	–	−0.75	−0.33	−0.41	−0.28	−0.48
mt-Cytb	0.42	0.28	−	0.54	0.78	0.5	0.51	0.27	–	0.84	–
mt-Rnr2	−0.44	−0.15	−0.97	−0.44	–	–	–	−0.52	−0.46	–	−0.53
Gm26924	−0.53	−0.31	–	−0.55	−0.74	–	–	−0.58	−0.44	–	−0.62
Ubb	0.67	0.31	–	–	0.95	–	–	0.39	0.32	–	0.86
Grid2	–	1.1	1.58	–	–	1.82	1.62	1.08	–	–	–
Lrrc4c	−1.2	–	–	–	−0.86	–	−0.98	−0.35	−0.59	–	−0.96
Fth1	0.37	0.35	–	–	–	–	0.76	0.32	0.66	–	0.71
Rpl26	0.38	1.24	–	–	1.39	–	–	0.62	1.16	–	0.74
Rora	−0.71	–	–	–	−0.63	1.39	–	–	−0.72	–	–
Tmtc2	−0.37	−0.36	–	–	−0.69	–	–	−0.42	–	–	−0.87
Plxdc2	−0.26	–	–	−0.39	−0.69	–	−1.02	−0.42	–	–	–
Dst	−0.3	−0.31	–	–	–	−0.84	–	−0.3	–	–	−0.63
Diap2	−0.3	−0.49	–	−0.71	−0.59	–	–	−0.28	–	–	–
Klf7	−0.25	–	–	−0.79	−0.59	−0.8	−0.57	–	–	–	–
Mt1	0.94	–	–	–	–	–	0.45	0.47	–	1.55	0.71
Dbi	0.9	–	–	–	1.44	–	1.08	0.24	0.47	–	–
mt-Rnr1	0.32	0.36	–	–	–	1.04	0.6	–	–	–	–
mt-Nd4	0.24	0.32	–	–	–	0.46	–	0.23	–	0.64	–
H3f3b	0.37	0.19	–	0.45	–	–	–	0.29	–	–	1.07
Cell type specific DEGs
Cyp26b1	−0.90	–	–	–	–	–	–	–	–	–	–
Gbp4	–	−0.54	–	–	–	–	–	–	–	–	–
Ier3ip1	–	–	1.81	–	–	–	–	–	–	–	–
Cd74	–	–	–	−1.43	–	–	–	–	–	–	–
Psmd7	–	–	–	–	1.12	–	–	–	–	–	–
Rgs4	–	–	–	–	–	−0.91	–	–	–	–	–
Fopnl	–	–	–	–	–	–	−0.72	–	–	–	–
Cldn11	–	–	–	–	–	–	–	0.25	–	–	–
Mmp16	–	–	–	–	–	–	–	–	−0.48	–	–
Dcaf7	–	–	–	–	–	–	–	–	–	−1.21	–
Mmd2	–	–	–	–	–	–	–	–	–	–	−1.55