Table 1.
Results of pathway and functional analysis in ARIC discovery meta-analysis and TFAM knockout methylation and expression datasets with combined P value and ARIC P value < 0.05. TFAM integrated (INT) P value represents combined methylation and expression results. Combined P value represents combined ARIC and TFAM methylation and expression results
ARIC P value | TFAM METH P value | TFAM RNA P value | TFAM INT P value | Combined pathway P value (ARIC, TFAM-METH, TFAM-RNA) | ||
A. KEGG pathways sorted by combined P value | ||||||
Pathway | Name | |||||
path:hsa04080 | Neuroactive ligand receptor interaction | 5.24E−12 | 4.41E−04 | 4.30E−04 | 8.77E−06 | 8.96E−16 |
path:hsa05033 | Nicotine addiction | 8.99E−04 | 6.30E−05 | 9.32E−04 | 7.72E−06 | 1.61E−08 |
path:hsa04024 | cAMP signaling pathway | 1.29E−05 | 2.32E−02 | 2.23E−01 | 3.25E−01 | 1.03E−05 |
path:hsa04614 | Renin-angiotensin system | 1.04E−05 | 5.11E−02 | 1.00E+ 00 | 1.00E+ 00 | 6.37E−05 |
path:hsa04723 | Retrograde endocannabinoid signaling | 1.89E−04 | 1.84E−02 | 1.56E−01 | 3.66E−03 | 6.48E−05 |
path:hsa05032 | Morphine addiction | 1.26E−02 | 4.38E−02 | 5.15E−02 | 1.40E−03 | 1.88E−03 |
path:hsa05031 | Amphetamine addiction | 3.54E−02 | 9.64E−02 | 4.23E−01 | 1.19E−01 | 4.18E−02 |
path:hsa04724 | Glutamatergic synapse | 1.80E−02 | 9.49E−02 | 1.00E+ 00 | 1.00E+ 00 | 4.73E−02 |
B. GO pathways sorted by combined P value | ||||||
Function | Name | |||||
GO:0007267 | Cell-cell signaling | 1.42E−03 | 1.71E−05 | 1.19E−02 | 1.42E−02 | 7.63E−08 |
GO:0099537 | Trans-synaptic signaling | 1.88E−03 | 1.06E−05 | 6.27E−02 | 1.92E−02 | 2.89E−07 |
GO:0099536 | Synaptic signaling | 1.88E−03 | 1.08E−05 | 6.34E−02 | 1.92E−02 | 2.97E−07 |
GO:0007268 | Chemical synaptic transmission | 1.88E−03 | 2.22E−05 | 6.05E−02 | 1.87E−02 | 5.47E−07 |
GO:0098916 | Anterograde trans-synaptic signaling | 1.88E−03 | 2.22E−05 | 6.05E−02 | 1.87E−02 | 5.47E−07 |
GO:0099095 | Ligand-gated anion channel activity | 4.30E−02 | 8.02E−04 | 1.23E−04 | 3.74E−07 | 8.74E−07 |
GO:0045202 | Synapse | 1.98E−04 | 9.81E−05 | 2.74E−01 | 5.92E−03 | 1.07E−06 |
GO:0045211 | Postsynaptic membrane | 8.33E−03 | 1.03E−04 | 1.45E−01 | 6.19E−04 | 1.78E−05 |