Table 2. Parameter names and values.

Parameter Name	Description	Comments	Value
rI	daily per-capita rate of infectious spread (de novo infection)	Fitted for each patient [Methods]	See Table 1
π	daily per-capita rate of mitotic spread (infected cell proliferation)	Derived from [35] (supplementary information)	0.0316 per day
δ	daily per-capita rate of infected cell death	Derived from [35] (supplementary information)	0.0316 per day
K	Density dependency parameter. Infected cell proliferation rates are half maximal when number of infected cells N(t) = K	Derived from [35] (supplementary information)	4.02 ×1011
R	Ratio of infectious to mitotic spread	derived from value of π and fitted values of rI	See Table 1