Table 2.

Bacteria that are significantly different when comparing T3T3 with T1T1 and that are not also different when comparing T3T3 with T1T3 or T3T1

	T3T3 (% ± SD)	T1T1 (% ± SD)	Log2FC (± SE)	p-value	FDR
Phyla
Tenericutes	1.11 ± 2.11	0.37 ± 1.03	−2.06 ± 0.79	0.01	0.05
Lentisphaerae	0.08 ± 0.18	0.01 ± 0.03	−3.21 ± 1.26	0.01	0.05
Class
RF3	0.23 ± 0.39	0.06 ± 0.19	−2.95 ± 1.04	0.004	0.08
[Lentisphaeria]	0.08 ± 0.18	0.00 ± 0.01	−3.19 ± 1.29	0.01	0.12
Betaproteobacteria	0.99 ± 0.84	1.71 ± 2.13	1.05 ± 0.47	0.02	0.14
Order
ML615J-28	0.23 ± 0.39	0.06 ± 0.19	−2.70 ± 1.03	0.01	0.18
Victivallales	0.08 ± 0.18	0.01 ± 0.04	−3.03 ± 1.29	0.02	0.18
Burkholderiales	0.99 ± 0.84	1.71 ± 2.13	1.06 ± 0.48	0.03	0.18
Turicibacterales	0.03 ± 0.06	0.05 ± 0.26	1.65 ± 0.81	0.04	0.23
Family
Porphyromonadaceae	3.34 ± 3.24	4.89 ± 3.02	1.13 ± 0.35	0.001	0.02
Victivallaceae	0.10 ± 0.21	0.01 ± 0.04	−3.33 ± 1.27	0.01	0.08
Streptococcaceae	0.24 ± 0.51	0.43 ± 1.10	1.19 ± 0.55	0.03	0.16
Alcaligenaceae	1.09 ± 0.97	1.80 ± 2.27	1.11 ± 0.50	0.03	0.16
Synergistaceae	0.02 ± 0.05	0.00 ± 0.01	−2.49 ± 1.17	0.03	0.16
Dehalobacteriaceae	0.03 ± 0.07	0.01 ± 0.01	−1.45 ± 0.60	0.04	0.17
Genus
Lachnobacterium	0.29 ± 0.62	0.04 ± 0.10	−3.12 ± 0.74	2.4E-05	0.0003
Clostridium	1.80 ± 3.01	0.38 ± 0.36	−1.39 ± 0.46	0.002	0.02
SMB53	0.30 ± 0.96	0.06 ± 0.13	−1.73 ± 0.60	0.004	0.03
Ruminococcus	8.30 ± 7.11	4.59 ± 4.07	−0.78 ± 0.29	0.01	0.05
Coprobacillus	0.01 ± 0.01	0.02 ± 0.05	1.50 ± 0.65	0.02	0.10
Parabacteroides	4.47 ± 4.06	6.05 ± 3.44	0.83 ± 0.36	0.02	0.10
Dehalobacterium	0.04 ± 0.09	0.01 ± 0.02	−1.30 ± 0.62	0.04	0.14
Odoribacter	0.64 ± 0.96	0.49 ± 0.93	−1.16 ± 0.56	0.04	0.14
Lachnospira	2.42 ± 2.13	1.44 ± 1.77	−0.75 ± 0.37	0.04	0.14