Table 2.
ES | Reactome ID (R‐HSA) | Reactome description | n | P‐value | FDR q‐value | Key gene pathway area and function |
---|---|---|---|---|---|---|
−0.39 | 72187 | mRNA processing | 50 | <0.0001 | <0.0001 | Metabolism of RNA: mRNA splicing and transport |
−0.35 | 159236 | mRNA transport | 68 | <0.0001 | <0.0001 | Metabolism of RNA: mature RNA transport via nuclear pore complex |
−0.31 | 3214841 | Methylation of histones | 42 | <0.0001 | 0.0005 | Chromatin organization: methylation of lysine 5 of histone H3 |
−0.59 | 390666 | Serotonin receptors | 10 | 0.002 | 0.01 | Signal transduction: 5‐HT1 and 5‐HT5A receptors that bind serotonin |
−0.38 | 264876 | Insulin processing | 24 | <0.0001 | 0.01 | Metabolism of proteins: translocation of insulin secretory granules |
0.30 | 381070 | Activates chaperones | 50 | <0.0001 | 0.008 | Metabolism of proteins: unfolded protein response in the endoplasmic reticulum |
0.42 | 449836 | Other interleukins | 23 | <0.0001 | 0.011 | Immune system: interleukin signalling: IL‐34, IL‐32, and CD4 |
0.33 | 2029481 | FC gamma receptor activation | 38 | <0.0001 | 0.015 | Innate immunity: FCGR‐dependent phagocytosis: immunoglobulin light chains |
0.39 | 5576893 | Plateau phase | 25 | <0.0001 | 0.018 | Cardiac conduction: calcium transport |
0.33 | 445355 | Smooth muscle contraction | 33 | 0.02 | 0.025 | Muscle contraction: tropomysin 2 and myosin light chains |
ES, enrichment score (negative: reduced promoter methylation; positive: increased promoter methylation); FDR: false discovery rate; n, number of genes in the gene set.