Menaquinone biosynthesis is reduced by antibiotics. (a) Significant differences in gene copy number due to antibiotic treatment were predicted in menaquinone metabolism genes (menA, menD, menH, and wrbA) in PRE-PK samples. (b) Copy numbers of menA gene from Akkermansia muciniphila, Bacteroides uniformis, and Muribaculum intestinale were determined by qPCR and show decreased gene copies in antibiotic-treated mice. P-values computed using a Kruskal–Wallis test followed by a Dunn’s multiple comparison test. *p < .05, **p < .01, and ***p < .001.