Table 1.
Primer sequences in this study
Primer | Forward primer | Reverse primer |
---|---|---|
U6 | AACGCTTCACGAATTTGCGT | CTCGCTTCGGCAGCACA |
circ_00686552 | GCCCAGTACCAGTTCA | CCAGTATTTCCTGCTTT |
miR-498 | TTTCAAGCCAGGGGGCGTTTTTC | GCTTCAAGCTCTGGAGGTGCTTTTC |
PAWR | GCCGCAGAGTGCTTAGATGAG | GCAGATAGGAACTGCCTGGATC |
Lentiviral-based shRNA targeting circ_0068655 sequences | ||
circ_0068655 | ||
shRNA #1 | ccggGTACCAGTTCAGCAAGTGTCTggatccAGACACTTGCTGAACTGGTACtttttg | aattcaaaaaGTACCAGTTCAGCAAGTGTCTggatccAGACACTTGCTGAACTGGTAC |
shRNA#2 | ccggGCAAGTGTCTCTACTGTCAGAggatccTCTGACAGTAGAGACACTTGC tttttg | aattcaaaaaGTACCAGTTCAGCAAGTGTCTggatccAGACACTTGCTGAACTGGTAC |
Circular RNA and the corresponding mutation of miR-498 binding site sequences | ||
Circular RNA | ||
circ_0068655 | ACGCTCGAGGTGCAAGTGAAAGTGT | ACGGCGGCCGCCACCAAATAATGGTTCTGGTTCCA |
circ_0068655 binding site | TGTAGGAAAACATATGGTAGCCG | CGGCTACCATATGTTTTCCTACA |
PAWR | ACGCTCGAGAATTTAAGGGATTTTCTTC | ACGGCGGCCGCTCCCAAAGTGCTGGGATTAC |
PAWR binding site | TAATATATGAAAGGGAATAGCCT | AGGCTATTCCCTTTCATATATTA |