Table 4.
Genes located close to significant SNPs (p < 1.0E−05) associated with carcass traits from GWAS on a discovery dataset of 4000 animals
| Gene name (symbol) | Trait | SNP position (Chr:bp) | MAF | p-value | % |
|---|---|---|---|---|---|
| ENSBTAG00000039810 | MS | 23:33569238 | 0.31 | 6.13E−06 | 3 |
| N-ethylmaleimide-sensitive factor attachment protein, gamma (NAPG) | EMA | 24:42615958 | 0.32 | 8.29E−06 | 3 |
| ENSBTAG00000033237 | EMA | 29:36927709 | 0.44 | 6.32E−06 | 3 |
| Epidermal growth factor receptor pathway substrate 15 like 1 (EPS15L1) | BFT | 7:6484738 | 0.06 | 9.94E−06 | 2 |
| SAM pointed domain containing ETS transcription factor (SPDEF) | BFT | 23:8537156 | 0.18 | 7.04E−06 | 2 |
| HEPACAM family member 2 (HEPACAM2) | CWT | 4:10371904 | 0.11 | 1.75E−06 | 3 |
| G protein subunit gamma transducin 1 (GNGT1) | CWT | 4:11059866 | 0.10 | 4.66E−08 | 4 |
| ENSBTAG00000035660 | CWT | 4:13589367 | 0.05 | 9.43E−08 | 4 |
| Fidgetin like 1 (FIGNL1) | CWT | 4:5373926 | 0.10 | 3.15E−07 | 4 |
| ENSBTAG00000018039 | CWT | 10:95431561 | 0.47 | 5.99E−06 | 3 |
| Coiled-coil-helix-coiled-coil-helix domain containing 7 (CHCHD7) | CWT | 14:25059742 | 0.34 | 3.23E−10 | 6 |
| Ribosomal protein L39 (RPL39) | CWT | 14:26181231 | 0.17 | 8.75E−09 | 5 |
| UBX domain protein 2B (UBXN2B) | CWT | 14:26303702 | 0.28 | 3.41E−06 | 3 |
| Thymocyte selection associated high mobility group box (TOX) | CWT | 14:26941314 | 0.18 | 1.08E−06 | 4 |
| ENSBTAG00000014045 | CWT | 14:29678929 | 0.24 | 8.54E−06 | 3 |
| KDEL endoplasmic reticulum protein retention receptor 2 (KDELR2) | CWT | 25:38887854 | 0.19 | 3.07E−06 | 3 |
Chr chromosome, bp base pairs, MAF minor allele frequency; % percentage of variance explained by the genotype