Table 2.
Summary of EST-SSR markers and genes in the targeted genomic region of A03 chromosome
| SSR marker (Gene ID) | Position (cM) | Functional annotation |
|---|---|---|
| GM1954 | 49.71 | – |
| IPAHM103 | 63.63 | – |
| DGR508* (Aradu.70RCL) | 69.33 | Putative clathrin assembly protein |
| GM2301 | 78.01 | – |
| GM2079 | 88.59 | – |
| DGR800* (Aradu.RT35T) | 102.95 | Xyloglucan endotransglucosylase |
| DGR361* (Aradu.RT35T) | 107.98 | Xyloglucan endotransglucosylase |
| DGR312* (Aradu.AB2YQ) | 116.55 | C2H2-like zinc finger protein |
| RS5 | 125.16 | – |
| gi56931710 | 125.43 | – |
| RS42 | 126.23 | – |
| RS47 | 127.03 | – |
| RS50 | 127.03 | – |
| FRS56 | 127.3 | – |
| DGR259* (Aradu.UG0RV) | 128.9 | MADS-box transcription factor |
| FRS49 | 130.24 | – |
| (Aradu.JG217) | – | LRR-Protein kinase superfamily protein |
| FRS72 | 132.12 | – |
| (Aradu.Z87JB) | – | Disease resistance protein (TIR-NBS-LRR class) |
| (Aradu.RKA6M) | – | Glucan endo-1,3 beta-glucosidase-like |
| (Aradu.T44NR) | – | Glucan endo-1,3 beta-glucosidase-like |
| (Aradu.1WV86) | – | Glucan endo-1,3 beta-glucosidase-like |
| (Aradu.RW91L) | – | Lipase/lipooxygenase PLAT/LH2 family |
| (Aradu.NG5IQ) | – | Glucan endo-1,3 beta-glucosidase-like |
| SSR_GO340445 | 133.53 | – |
| RS78 | 134.06 | – |
| RS74 | 134.6 | – |
| RS103 | 137.55 | – |
| DGR329* (Aradu.13SFN) | 143.12 | GDSL esterase/lipase |
| DGR2409* (Aradu.BZ2JW) | 149.11 | CTD small phosphatase-like protein |
| GM2009 | 155.94 | – |
Where, *Indicate the identified EST-SSR markers in the present study between marker locus GM2009 and GM1954, a QTL hot spot region for LLS and rust; (–) details not available