Table 2.
Details of 69 QTLs identified for 10 different traits under late sown conditions.
| Sl.no | Trait | Marker | alleles | Chr | Pos (mbp) | P-value | R2 (%) |
|---|---|---|---|---|---|---|---|
| 1 | GFD | AX-94833876 | G/A | 2DS | 30.252 | 7.50E-06 | 3.35 |
| 2 | GFD | AX-94779369 | C/A | 4DL | 293.546 | 8.61E-05 | 2.52 |
| 3 | GFD | AX-94853198 | A/C | 5DL | 379.79 | 7.32E-05 | 2.55 |
| 4 | GFD | AX-94538863 | C/T | 6AS | 6.735 | 6.18E-05 | 2.59 |
| 5 | GFD | AX-95078558 | C/T | 7BL | 652.934 | 5.28E-06 | 3.66 |
| 6 | DM | AX-94833876 | G/A | 2DS | 30.252 | 6.23E-06 | 3.42 |
| 7 | DM | AX-94779369 | C/A | 4DL | 293.546 | 6.45E-05 | 2.62 |
| 8 | DM | AX-94853198 | A/C | 5DL | 379.79 | 1.99E-06* | 3.55 |
| 9 | DM | AX-95078558 | C/T | 7BL | 652.934 | 7.02E-07* | 4.32 |
| 10 | BM | AX-94475572 | A/G | 2BL | 594.848 | 7.01E-05 | 2.54 |
| 11 | BM | AX-94860125 | C/G | 7BL | 468.294 | 9.88E-06 | 3.31 |
| 12 | TGW | AX-94918415 | A/G | 2BL | 623.056 | 2.62E-05 | 3.62 |
| 13 | TGW | AX-94684351 | C/T | 5BL | 440.238 | 1.15E-05 | 3.49 |
| 14 | TGW | AX-95078558 | C/T | 7BL | 652.934 | 9.90E-06 | 3.67 |
| 15 | PTL | AX-95072103 | G/T | 1AS | 28.620 | 1.55E-04 | 2.14 |
| 16 | PTL | AX-95090184 | A/G | 2AL | 773.186 | 7.45E-04 | 1.86 |
| 17 | PTL | AX-94675758 | G/A | 2DS | 9.902 | 6.52E-04 | 1.44 |
| 18 | PTL | AX-94842402 | A/C | 2DS | 32.971 | 7.08E-04 | 1.71 |
| 19 | PTL | AX-95189509 | G/A | 2DS | 102.859 | 1.52E-04 | 2.17 |
| 20 | PTL | AX-94449793 | G/A | 5BL | 547.584 | 4.58E-04 | 2.05 |
| 21 | PTL | AX-95210974 | T/G | 6BL | 582.825 | 8.57E-04 | 1.73 |
| 22 | PTL | AX-95202740 | C/T | 6BS | 218.655 | 8.53E-04 | 1.73 |
| 23 | PTL | AX-95133008 | G/A | 7AL | 586.276 | 3.87E-04 | 1.85 |
| 24# | PTL | AX-95095444 | G/T | 7AL | 589.756 | 3.35E-04 | 1.90 |
| PTL | AX-94997935 | G/A | 7AL | 594.459 | 8.64E-04 | 1.70 | |
| 25 | PTL | AX-94918120 | G/T | 7BL | 557.061 | 9.01E-04 | 1.75 |
| 26 | PTL | AX-94880471 | C/G | 7BS | 5.515 | 8.78E-04 | 1.94 |
| 27# | PTL | AX-94383522 | C/T | 7BS | 37.855 | 4.34E-04 | 1.85 |
| PTL | AX-95207464 | G/C | 7BS | 37.857 | 1.69E-04 | 2.09 | |
| 28 | PTL | AX-94896314 | C/G | 7DL | 516.030 | 1.14E-04 | 1.76 |
| 29# | PTL | AX-94476476 | A/G | 7DL | 550.098 | 4.28E-04 | 1.84 |
| PTL | AX-94703466 | T/C | 7DL | 550.102 | 5.93E-04 | 1.75 | |
| 30 | PTL | AX-94515612 | C/T | 7DS | 88.149 | 9.61E-05 | 1.83 |
| 31 | PTL | AX-95196784 | T/C | 7DS | 88.194 | 5.45E-05 | 1.94 |
| 32 | PHT | AX-94995102 | C/T | 1BL | 540.729 | 4.52E-05 | 2.44 |
| 33 | PHT | AX-94691823 | A/C | 2AS | 16.066 | 2.79E-05 | 2.54 |
| 34 | PHT | AX-94764260 | C/T | 2AL | 570.268 | 2.80E-05 | 2.54 |
| 35 | PHT | AX-94833876 | G/A | 2DS | 30.252 | 3.39E-06* | 3.21 |
| 36 | PHT | AX-94561691 | A/C | 3B | 39.141 | 9.43E-06 | 3.02 |
| 37 | PHT | AX-94889110 | G/A | 3B | 107.666 | 4.64E-05 | 2.65 |
| 38 | PHT | AX-94421831 | T/A | 3B | 691.661 | 9.30E-05 | 2.28 |
| 39 | PHT | AX-94649016 | A/C | 4DL | 337.074 | 1.56E-05 | 2.77 |
| 40 | PHT | AX-94556881 | A/G | 5BL | 496.98 | 3.34E-05 | 2.54 |
| 41 | PHT | AX-94863298 | C/A | 5BL | 506.761 | 1.63E-05 | 2.7 |
| 42 | PHT | AX-94916820 | C/G | 6BL | 452.188 | 5.05E-05 | 2.41 |
| 43 | PHT | AX-95078558 | C/T | 7BL | 652.934 | 1.59E-07* | 4.06 |
| 44 | HI | AX-94401187 | G/C | 1DS | 31.692 | 4.17E-06* | 3.97 |
| 45 | HI | AX-95078558 | C/T | 7BL | 652.934 | 2.75E-07* | 4.99 |
| 46 | HI | AX-94626763 | T/G | 7BL | 701.218 | 1.25E-06* | 4.81 |
| 47 | GY | AX-94991116 | G/A | 1BS | 91.558 | 1.46E-05 | 2.73 |
| 48 | GY | AX-95012948 | T/G | 1BS | 148.898 | 1.46E-05 | 2.73 |
| 49 | GY | AX-94544437 | C/G | 1DS | 27.556 | 4.58E-05 | 2.45 |
| 50 | GY | AX-94518519 | G/A | 1DS | 31.431 | 5.61E-05 | 2.59 |
| 51 | GY | AX-94433426 | A/C | 1DS | 162.062 | 8.73E-05 | 2.23 |
| 52 | GY | AX-94981856 | A/G | 1DL | 464.319 | 6.35E-05 | 2.37 |
| 53 | GY | AX-95105278 | T/C | 2BS | 104.833 | 9.69E-06 | 2.8 |
| 54 | GY | AX-94508364 | G/A | 2BS | 184.8 | 1.69E-05 | 2.7 |
| 55 | GY | AX-94481464 | A/C | 2BS | 205.477 | 6.37E-06 | 2.88 |
| 56 | GY | AX-95099434 | A/G | 3AL | 434.615 | 1.61E-06* | 3.3 |
| 57 | GY | AX-95104956 | T/G | 3B | 684.618 | 1.97E-05 | 2.74 |
| 58 | GY | AX-94413411 | G/T | 3DL | 391.263 | 9.35E-05 | 1.82 |
| 59 | GY | AX-94734562 | G/A | 5BS | 134.925 | 4.06E-05 | 2.46 |
| 60 | GY | AX-94616006 | C/A | 7AS | 205.485 | 4.05E-08* | 4.32 |
| 61 | GNM | AX-95129810 | C/G | 1DS | 0.513 | 6.77E-05 | 2.84 |
| 62 | GNM | AX-94449793 | G/A | 5BL | 547.584 | 1.91E-05 | 3.5 |
| 63 | GNM | AX-95207464 | G/C | 7BS | 37.855 | 9.63E-05 | 2.82 |
| 64 | GFR | AX-94508364 | G/A | 2BS | 184.8 | 2.48E-05 | 2.24 |
| 65 | GFR | AX-94481464 | A/C | 2BS | 205.477 | 4.79E-05 | 2.06 |
| 66 | GFR | AX-95099434 | A/G | 3AL | 434.615 | 1.48E-05 | 2.37 |
| 67 | GFR | AX-95104956 | T/G | 3B | 684.618 | 4.71E-05 | 2.18 |
| 68 | GFR | AX-94434258 | T/C | 7AS | 161.738 | 1.74E-05 | 2.48 |
| 69 | GFR | AX-94616006 | C/A | 7AS | 205.485 | 2.84E-06* | 2.77 |
*Indicates Bonferroni corrected P value (P valve < 4.19E-6), #SNPs are in complete LD.