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. 2020 Oct 1;7:154. doi: 10.1038/s41438-020-00380-3

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a The Shannon-Wiener index of Foc-resistant cultivar (green) and Foc-susceptible cultivar (orange) rhizosphere bacterial communities calculated with all clustered OTUs. The horizontal bars within the boxes represent the medians. The tops and bottoms of the boxes represent the 75th and 25th quartiles, respectively. All outliers were plotted as individual points. b Principal coordinate analysis (PCoA) with Bray-Curtis dissimilarity performed on the taxonomic profile (OTU level for a 16S rRNA dataset) of the rhizosphere of the two cucumber cultivars. The R-value and P-value were evaluated via the Adonis test. c Relative abundance (%) of members of the major bacterial phyla, excluding low-abundance OTUs (mean abundance <0.02%), present in the rhizosphere microbial communities of Foc-resistant cultivar (FRC) or Foc-susceptible cultivar (FSC) samples. d The relative abundance (%) of members of specific genera enriched in the rhizosphere soil of the FSC and of the entire genus present here was significantly different (t-test: p<0.05) between the two cultivars. e Inhibitory effects of six isolates on F. oxysporum belonging to Comamonadaceae (G11, FM2), Pseudomonas (M8, G2), and Stenotrophomonas (G47).