Table 1.

Samples and sequence data sets used in this study

Breeds	Subspecies	Location	Animal count	Coverage	CNV count	BioProject
Angus	Bos taurus	Europe	20	7–37×	34,774	PRJNA343262, PRJNA256210, PRJNA176557, PRJNA513064
Boran	Bos indicus	African	7	10–12×	27,996	PRJNA312138
Brahman	Bos indicus	Asian	4	17–19×	17,290	PRJNA432125
Gir	Bos indicus	Asian	3	7–15×	8787	PRJNA277147
Hereford	Bos taurus	Europe	12	8–17×	15,534	PRJNA343262, PRJNA176557
Kenana	Bos indicus	African	7	11×	29,291	PRJNA312138
Nelore	Bos indicus	Asian	6	6–10×	15,786	PRJNA507259, PRJNA277147
Ogaden	Bos indicus	African	7	10–12×	29,360	PRJNA312138
N’dama	Bos taurus	African	4	5–15×	1992	PRJNA604048
Muturu	Bos taurus	African	3	7–10×	2013	PRJNA604048

Note: The data of N’dama and Muturu were newly generated. The data for other animals were downloaded from the NCBI database