Table 2.
The top 20 variants with the lowest p-values from the meta-analysis of genome wide associations studies from two resource populations (F2 and HS; half-sib) with the trait ‘posterior probability of a hen to belong to the extreme feather pecking subgroup’ (pEFP)
| Chr | Position (bp) | ID | p-value | Variant effect | Symbol |
|---|---|---|---|---|---|
| 3 | 104,391,861 | rs740633021 | 5.533E-08 | intron / upstream gene | NRBP1 / LOC107053158 (ncRNA) |
| 1 | 91,991,270 | rs737049739 | 1.878E-07 | intergenic | EPHA6 |
| 14 | 2,899,119 | rs14070749 | 1.968E-07 | non coding transcript / exon | LOC101750426 (ncRNA) |
| 1 | 133,743,444 | rs15428397 | 2.710E-07 | intron | KIAA1211L |
| 10 | 11,902,712 | rs317563905 | 2.938E-07 | downstream gene | SH3GL3 / LMINA |
| 10 | 11,904,575 | rs316617403 | 3.373E-07 | downstream gene / 3 prime UTR | SH3GL3 / LMINA |
| 10 | 11,901,170 | rs315794181 | 3.564E-07 | downstream gene / 3 prime UTR | SH3GL3 / LMINA |
| 5 | 8,789,444 | rs312755711 | 5.313E-07 | intron, non coding transcript | LOC107053374 (ncRNA) |
| 9 | 14,663,252 | rs14674949 | 5.865E-07 | intron | LPP |
| 18 | 6,202,927 | rs736783194 | 7.428E-07 | intergenic | C18H17ORF67 |
| 2 | 48,074,231 | 2_48,074,231 | 9.747E-07 | intron | PDE1C |
| 11 | 16,848,616 | rs732938021 | 0.000001084 | intron | KLHL36 |
| 2 | 16,335,664 | rs731673476 | 0.000001226 | intron | MYO3A |
| 13 | 8,132,912 | rs739578589 | 0.000001461 | intron | GABRB2 |
| 10 | 11,904,145 | rs313724095 | 0.000001503 | downstream gene / 3 prime UTR | SH3GL3 / LMINA |
| 1 | 133,734,332 | rs14889804 | 0.000001544 | intron | KIAA1211L |
| 1 | 133,762,004 | rs13624872 | 0.000001753 | intron | KIAA1211L |
| 1 | 133,776,463 | rs313923430 | 0.000002173 | intron | TSGA10 |
| 1 | 133,733,974 | rs1059691759 | 0.000002254 | intron | KIAA1211L |
| 6 | 29,989,563 | 6_29,989,563 | 0.000002303 | intron | SHTN1 |