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. 2020 Oct 1;21:114. doi: 10.1186/s12863-020-00920-9

Table 2.

The top 20 variants with the lowest p-values from the meta-analysis of genome wide associations studies from two resource populations (F2 and HS; half-sib) with the trait ‘posterior probability of a hen to belong to the extreme feather pecking subgroup’ (pEFP)

Chr Position (bp) ID p-value Variant effect Symbol
3 104,391,861 rs740633021 5.533E-08 intron / upstream gene NRBP1 / LOC107053158 (ncRNA)
1 91,991,270 rs737049739 1.878E-07 intergenic EPHA6
14 2,899,119 rs14070749 1.968E-07 non coding transcript / exon LOC101750426 (ncRNA)
1 133,743,444 rs15428397 2.710E-07 intron KIAA1211L
10 11,902,712 rs317563905 2.938E-07 downstream gene SH3GL3 / LMINA
10 11,904,575 rs316617403 3.373E-07 downstream gene / 3 prime UTR SH3GL3 / LMINA
10 11,901,170 rs315794181 3.564E-07 downstream gene / 3 prime UTR SH3GL3 / LMINA
5 8,789,444 rs312755711 5.313E-07 intron, non coding transcript LOC107053374 (ncRNA)
9 14,663,252 rs14674949 5.865E-07 intron LPP
18 6,202,927 rs736783194 7.428E-07 intergenic C18H17ORF67
2 48,074,231 2_48,074,231 9.747E-07 intron PDE1C
11 16,848,616 rs732938021 0.000001084 intron KLHL36
2 16,335,664 rs731673476 0.000001226 intron MYO3A
13 8,132,912 rs739578589 0.000001461 intron GABRB2
10 11,904,145 rs313724095 0.000001503 downstream gene / 3 prime UTR SH3GL3 / LMINA
1 133,734,332 rs14889804 0.000001544 intron KIAA1211L
1 133,762,004 rs13624872 0.000001753 intron KIAA1211L
1 133,776,463 rs313923430 0.000002173 intron TSGA10
1 133,733,974 rs1059691759 0.000002254 intron KIAA1211L
6 29,989,563 6_29,989,563 0.000002303 intron SHTN1