Table 1.

Top five differentially expressed genes (DEGs) in intestinal duodenum tissues at the time of CeD diagnosis versus post-gluten free dietary management.

Top 5 up and down regulated genes
	Gene ID	LogFC	T-test	P-value	FDR
Upregulated	LPL	4.36342621	5.51	2.50 × 10–5	8.33 × 10–5
	CXCL11	3.44269906	5.20	4.95 × 10–5	8.25 × 10–5
	MMP3	3.10503802	4.42	2.9 × 10–4	3.62 × 10–4
	LCN2	2.61525006	4.94	8.92 × 10–5	1.78 × 10–4
	MMP12	2.44493598	3.67	1.61 × 10–3	3.22 × 10–3
Downregulated	APOA1	−4.3448706	−5.38	3.33 × 10–5	8.32 × 10–5
	HMGCS2	−3.5650963	−5.55	2.29 × 10–5	1.14 × 10–4
	CYP3A4	−3.1418	−5.23	4.59 × 10–5	9.18 × 10–5
	DGAT2	−2.803011	−6.80	1.64 × 10–6	1.64 × 10–5
	APOC3	−2.7603543	−4.35	3.36 × 10–4	3.74 × 10–4