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. Author manuscript; available in PMC: 2021 Nov 1.
Published in final edited form as: J Cell Physiol. 2020 Apr 24;235(11):8520–8532. doi: 10.1002/jcp.29696

Table 1.

Primers used for allele identification and for qRT-PCR.

A. rimers for allele identification and DNA recombination
Allele Strand Sequence Amplicon Size (bp)
BGLAP-Cre transgene Forward
Reverse
5’-CAAATAGCCCTGCAGAT-3’
5’-TGATACAAGGGACATCTTCC-3’
300
Nfatc1loxP Forward
Reverse
5’-GGACAGTCTAAGGCCTGCTG-3’
5’-ACCCCACATCCCAGAGTGA-3’
Nfatc1WT = 215
Nfatc1loxP = 300
Nfatc2loxP Forward
Reverse
5’-GGTGTCTCCCTCAAATGTTCA-3’
5’-GCGAATATGAGGACCCAAGT-3’
Nfatc2WT = 160
Nfatc2loxP= 250
LoxP recombination of Nfatc1loxP Forward
Forward
Reverse
5’-AAGGAATTACTGGGAAGCCTGGCA-3’
5’-AGGGACTATCATTTGGCAGGGACA-3’
5’-ACAGGAAACAGCTCTGTTCCACAC-3’
Recombined = 510 (Nfatc1Δ)
Not recombined = 410 (Nfatc1loxP)
LoxP recombination of Nfatc2loxP Forward
Reverse
5’-AGCACAATGCCCATGTTCAC-3’
5’-GGTGTCTCCCTCAAATGTTCA-3’
Recombined = 358 (Nfatc2Δ)
Not recombined = 2342 (Nfatc2loxP)
B. Primers for qRT-PCR and GenBank accession numbers for the transcript variants recognized by primer pairs
Gene Strand Primer Sequence GenBank Accession Number
Alp1 Forward
Reverse
5’-CGGTTAGGGCGTCTCCACAGTAAC[FAM]G-3’
5’-CTTGGAGAGGGCCACAAAGG-3’
NM_007431
Bglap Forward
Reverse
5’-GACTCCGGCGCTACCTTGGGTAAG-3’
5’-CCCAGCACAACTCCTCCCTA-3’
NM_001037939
Nfatc1 Forward
Reverse
5’-GCGCAAGTACAGTCTCAATGGCC-3’
5’-GGATGGTGTGGGTGAGTGGT-3’
NM_198429; NM_001164110; NM_001164111; NM_001164112; NM_00116641091; NM_016791
Nfatc2 Forward
Reverse
5’-AGAACAACATGAGAGCCACCATC-3’
5’-AGCTCGATGTCAGCGTTTCG-3’
NM_010899
Rpl38 Forward
Reverse
5’-AGAACAAGGATAATGTGAAGTTCAAGGTTC-3’
5’-CTGCTTCAGCTTCTCTGCCTTT-3’
NM_001048057; NM_001048058; NM_023372